PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC17549_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ERF
Protein Properties Length: 90aa    MW: 9950.26 Da    PI: 10.224
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC17549_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.41.8e-181464255
          AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55
                  y+GVr+++++ +Wv+eIr+p     r  +r++lg+f t+e+Aa a++ a+++l+g
  RrC17549_p1 14 LYRGVRQRRNSDKWVSEIREP-----RkpTRIWLGTFSTPEMAAIAYDVAALALKG 64
                 69******************9.....448************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.1E-121364IPR001471AP2/ERF domain
CDDcd000182.90E-281374No hitNo description
Gene3DG3DSA:3.30.730.105.1E-281473IPR001471AP2/ERF domain
SuperFamilySSF541713.2E-201474IPR016177DNA-binding domain
PROSITE profilePS5103220.9561472IPR001471AP2/ERF domain
SMARTSM003801.3E-311478IPR001471AP2/ERF domain
PRINTSPR003678.4E-61526IPR001471AP2/ERF domain
PRINTSPR003678.4E-63854IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 90 aa     Download sequence    Send to blast
MPGTSKENGG RQPLYRGVRQ RRNSDKWVSE IREPRKPTRI WLGTFSTPEM AAIAYDVAAL  60
ALKGTETEFN FPNSVSSLPV PASMSPGDIQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11021RQPLYRGVRQRR
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018479913.12e-60PREDICTED: ethylene-responsive transcription factor ERF024-like
SwissprotQ9SJR01e-49ERF24_ARATH; Ethylene-responsive transcription factor ERF024
TrEMBLA0A078JYM04e-55A0A078JYM0_BRANA; BnaAnng34830D protein
TrEMBLA0A397ZWF94e-55A0A397ZWF9_BRACM; Uncharacterized protein
TrEMBLM4DL544e-55M4DL54_BRARP; Uncharacterized protein
STRINGBra017235.1-P7e-56(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM64242546
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36450.11e-42ERF family protein