PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC17569_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bZIP
Protein Properties Length: 141aa    MW: 16484.2 Da    PI: 9.2597
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC17569_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_139.99.1e-1357104552
                  CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
       bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleel 52 
                  +++rr+ +NRe+ArrsR RK+  ++eL   v  L +eN  L+++l++ 
  RrC17569_p1  57 RKQRRMLSNRESARRSRMRKQRHLDELWSQVIRLRNENNCLIDKLNTV 104
                  79****************************************999976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.5E-1353117IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.49655118IPR004827Basic-leucine zipper domain
PfamPF001701.0E-1057114IPR004827Basic-leucine zipper domain
SuperFamilySSF579592.18E-1257106No hitNo description
Gene3DG3DSA:1.20.5.1701.5E-1057104No hitNo description
CDDcd147021.03E-1458106No hitNo description
PROSITE patternPS0003606075IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 141 aa     Download sequence    Send to blast
MPSSPTSSSS LNYLNELINN NYSSSSNGQD VMTSNNSTSD EDHHHNHRQS IIILDERKQR  60
RMLSNRESAR RSRMRKQRHL DELWSQVIRL RNENNCLIDK LNTVLETQDN VLKENSKLKE  120
EASDLRRLVC DLKSNKNNNS F
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16976RRSRMRKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in somatic embryogenesis. Acts as positive regulator of BHLH109. {ECO:0000269|PubMed:26973252}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4935451e-113AB493545.1 Arabidopsis thaliana At2g04038 gene for hypothetical protein, partial cds, clone: RAAt2g04038.
GenBankAC0071781e-113AC007178.6 Arabidopsis thaliana chromosome 2 clone F3L12 map mi320, complete sequence.
GenBankCP0026851e-113CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018458396.11e-94PREDICTED: basic leucine zipper 43-like
SwissprotQ9FMC21e-32BZP43_ARATH; Basic leucine zipper 43
TrEMBLA0A0D3AVT98e-75A0A0D3AVT9_BRAOL; Uncharacterized protein
STRINGBo2g138370.11e-75(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM28922469
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G04038.11e-57basic leucine-zipper 48
Publications ? help Back to Top
  1. Nowak K,Gaj MD
    Stress-related function of bHLH109 in somatic embryo induction in Arabidopsis.
    J. Plant Physiol., 2016. 193: p. 119-26
    [PMID:26973252]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]