PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC17640_p2
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family CO-like
Protein Properties Length: 211aa    MW: 24229.7 Da    PI: 10.5499
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC17640_p2genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box25.92.1e-081863341
     zf-B_box  3 erkCpeHeekelqlfCedCqqllC.edClleeHkg......Htvvp 41
                  r+C+ +e+ ++ +fC+ +   lC   C +++H+       H++v 
  RrC17640_p2 18 VRVCEACERAPAAFFCKADAASLCiGACDTQIHSAnkfarkHQRVA 63
                 689*********************779******6688888998876 PP
2CCT67.82.9e-23166208143
          CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkq 43 
                  Rea+++RY+eK+ktRkFeK++rY sRKa+Ae+RpR+KGrFvk+
  RrC17640_p2 166 REARVMRYREKKKTRKFEKTVRYTSRKAYAETRPRIKGRFVKR 208
                  9****************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.0961664IPR000315B-box-type zinc finger
SMARTSM003362.5E-131664IPR000315B-box-type zinc finger
PfamPF006439.9E-71864IPR000315B-box-type zinc finger
CDDcd000211.78E-61964No hitNo description
PfamPF062034.8E-18166208IPR010402CCT domain
PROSITE profilePS5101716.509166208IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 211 aa     Download sequence    Send to blast
CDAQVHAANL FAFRHERVRV CEACERAPAA FFCKADAASL CIGACDTQIH SANKFARKHQ  60
RVAILPISVK SYSSMATNHS NYNVPQRRYS RDGVVPLQVE ESKGHMHHEQ HNCQFVFTNV  120
SSGCHMVSLM PESTTSDTKL SNPRSPKPTT EQLPEHPRQI LSLVDREARV MRYREKKKTR  180
KFEKTVRYTS RKAYAETRPR IKGRFVKRLR S
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. Does not affect flowering time.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Expressed with a circadian rhythm showing a peak at dawn.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2400879e-95AC240087.1 Brassica oleracea clone BOT01-44D22, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013686315.11e-103zinc finger protein CONSTANS-LIKE 1
SwissprotQ965027e-71COL2_ARATH; Zinc finger protein CONSTANS-LIKE 2
TrEMBLA0A3P6AML81e-102A0A3P6AML8_BRACM; Uncharacterized protein
STRINGBra023541.1-P1e-102(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM21282670
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02380.14e-52CONSTANS-like 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Simon S,Rühl M,de Montaigu A,Wötzel S,Coupland G
    Evolution of CONSTANS Regulation and Function after Gene Duplication Produced a Photoperiodic Flowering Switch in the Brassicaceae.
    Mol. Biol. Evol., 2015. 32(9): p. 2284-301
    [PMID:25972346]