PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC17675_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family B3
Protein Properties Length: 283aa    MW: 31758.8 Da    PI: 6.3876
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC17675_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3106.51.3e-3343151199
                  EEEE-..-HHHHTT-EE--HHH.HTT..........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                  f+k+ltpsdv+k++rlv+pk++ae++          + ++e+++ l++ede g+ W+++++y+++s++yvltkGW++Fvk+++L+ gD+v F++++++
  RrC17675_p1  43 FEKTLTPSDVGKLNRLVIPKQHAEKYfplsaisnnaDASTEKGMLLSFEDELGKCWRFRYSYWNSSQSYVLTKGWSRFVKDKQLDPGDVVFFQRQRSD 140
                  99********************************9988889****************************************************99889 PP

                  EE..EEEEE-S CS
           B3  89 efelvvkvfrk 99 
                   ++l+++++r+
  RrC17675_p1 141 PRRLFIGWRRR 151
                  999******97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.2E-4037158IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.41E-3138151IPR015300DNA-binding pseudobarrel domain
CDDcd100175.65E-2842140No hitNo description
SMARTSM010193.6E-2443152IPR003340B3 DNA binding domain
PfamPF023626.5E-3143151IPR003340B3 DNA binding domain
PROSITE profilePS5086314.08543152IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010073Biological Processmeristem maintenance
GO:0010358Biological Processleaf shaping
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
MSVNHYSTDH HHTLLWQHLH TTDASDTTAA ATWLNEDQKE SLFEKTLTPS DVGKLNRLVI  60
PKQHAEKYFP LSAISNNADA STEKGMLLSF EDELGKCWRF RYSYWNSSQS YVLTKGWSRF  120
VKDKQLDPGD VVFFQRQRSD PRRLFIGWRR RGQGSSSAAN PTSYSSSMAA APQYLQIHAS  180
SNYSNHPSHS EYSHYGAAVG TASETHSIPS SSAVGSSRTV RLFGVNLECQ MDEDNGDDSV  240
AAPTATECPD GYYGQNMYYY YTPHPHNMMG DAVSRDETAE TII
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A7e-50391514113B3 domain-containing transcription factor NGA1
5os9_B7e-50391514113B3 domain-containing transcription factor NGA1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018445235.10.0PREDICTED: B3 domain-containing protein At5g06250 isoform X1
SwissprotQ9FNI31e-138Y5625_ARATH; B3 domain-containing protein At5g06250
TrEMBLA0A3N6RKG21e-179A0A3N6RKG2_BRACR; Uncharacterized protein
STRINGBo9g176470.11e-168(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM122028100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06250.21e-125B3 family protein