PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC17737_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family FAR1
Protein Properties Length: 431aa    MW: 48097.5 Da    PI: 8.3186
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC17737_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR163.18.1e-2060134189
         FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 
                  ++Yn+YA ++GF+ r+ + ++s+++g++ +r+fvCskeg++ +              +rtgC+a ++v+++++gkw+++++++eHnHel
  RrC17737_p1  60 EYYNAYAARTGFKARTGQLYRSRTDGTVSSRRFVCSKEGFQLN--------------SRTGCTAFIRVQRRDTGKWVLDQIQKEHNHEL 134
                  69**************************************876..............589***************************98 PP
2FAR165.41.5e-20230306191
         FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 
                  +fY++YA+ vGF+vr+ +  +sk +++it+r+fvCs+eg+++++              r+gC a +++k++++g w v++l ++HnH+l p
  RrC17737_p1 230 QFYQAYAEVVGFRVRIGQLFRSKVDNSITSRRFVCSREGFQHPS--------------RMGCGAYMRIKRQDSGGWIVDRLCKDHNHDLEP 306
                  6***************************************9994..............799***************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.5E-1560134IPR004330FAR1 DNA binding domain
PfamPF031014.5E-16230306IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 431 aa     Download sequence    Send to blast
MESSATEQHS SFNNMVTKAY PLRILNHTTT DEHVNSGGGG GGAAEPYVGL EFDTAEEARE  60
YYNAYAARTG FKARTGQLYR SRTDGTVSSR RFVCSKEGFQ LNSRTGCTAF IRVQRRDTGK  120
WVLDQIQKEH NHELGCEAEE ITTTPRPVRA PAPTKLAATV NQHRPKMKVV DESDREQRSS  180
SSKSTSLKRF KSGEGEVSND GHHLHHNPKA VSGSEPYAGL EFGSANEACQ FYQAYAEVVG  240
FRVRIGQLFR SKVDNSITSR RFVCSREGFQ HPSRMGCGAY MRIKRQDSGG WIVDRLCKDH  300
NHDLEPGKKN QDGVKKITED VMMTGGGGLD SVDLIELNNS HHIKKAATSS SRENRIGKEW  360
YPLLLDYFQS KQTEDMGFFY AVELDVHSGS CLSVFWADSR ARFACSQFGD AVVLDTSYRK  420
GSYSVPFATF V
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription activator involved in regulating light control of development.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018476471.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 12 isoform X1
RefseqXP_018476472.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 12 isoform X1
SwissprotQ3E7I50.0FRS12_ARATH; Protein FAR1-RELATED SEQUENCE 12
TrEMBLA0A0D3B1W20.0A0A0D3B1W2_BRAOL; Uncharacterized protein
STRINGBo3g013440.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM57302239
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18960.10.0FAR1-related sequence 12
Publications ? help Back to Top
  1. Ritter A, et al.
    The transcriptional repressor complex FRS7-FRS12 regulates flowering time and growth in Arabidopsis.
    Nat Commun, 2017. 8: p. 15235
    [PMID:28492275]
  2. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]