PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC17785_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family M-type_MADS
Protein Properties Length: 171aa    MW: 19564.7 Da    PI: 10.8058
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC17785_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF70.71.3e-221053245
                 ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
       SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                 ri+ ++ rqvtfskRr+g++KKA+EL++LC+aev +i++s+  k
  RrC17785_p1 10 RIKKETHRQVTFSKRRAGLFKKASELCTLCGAEVGIIVYSPAKK 53
                 799*************************************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006623.997161IPR002100Transcription factor, MADS-box
SMARTSM004322.0E-31160IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.75E-28177IPR002100Transcription factor, MADS-box
CDDcd002653.08E-34276No hitNo description
PRINTSPR004042.1E-17323IPR002100Transcription factor, MADS-box
PfamPF003192.6E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004042.1E-172338IPR002100Transcription factor, MADS-box
PRINTSPR004042.1E-173859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 171 aa     Download sequence    Send to blast
MGRQRIPMVR IKKETHRQVT FSKRRAGLFK KASELCTLCG AEVGIIVYSP AKKPFSFGHP  60
SVESVLDRYL SRNNLSIAQE QKPQGNTAAS SVLNMELTQI VSQLEEAKKK GQATAEMRKA  120
NAVRWSMTNW WERPVEEMNM VQLREMKSAL EELWKIVVSE RNTAQRVGLR M
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A5e-16173173MEF2C
5f28_B5e-16173173MEF2C
5f28_C5e-16173173MEF2C
5f28_D5e-16173173MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Controls central cell differentiation during female gametophyte development. {ECO:0000269|PubMed:18599653, ECO:0000269|PubMed:18713950}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013689999.21e-113agamous-like MADS-box protein AGL61
SwissprotQ4PSU48e-87AGL61_ARATH; Agamous-like MADS-box protein AGL61
TrEMBLA0A0D3C1Y61e-111A0A0D3C1Y6_BRAOL; Uncharacterized protein
TrEMBLA0A3P6CXN51e-111A0A3P6CXN5_BRAOL; Uncharacterized protein
STRINGBo4g157220.11e-112(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM8628390
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.13e-89AGAMOUS-like 61
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]