PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC17805_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family CO-like
Protein Properties Length: 370aa    MW: 42495.6 Da    PI: 6.0191
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC17805_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box18.73.7e-06647337
     zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg.......H 37
                 +++C++++  +++ +C++    +C +C  + H++       H
  RrC17805_p1  6 PPMCDHCNMGKAIVYCKTHLASVCSQCDRKFHHYvtmdspdH 47
                 689*****977********************96655555555 PP
2CCT54.73.5e-19313356144
          CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                  R +a++RY eK+k+RkF KkirYesRK  A++++R+KGrF+k++
  RrC17805_p1 313 RLEAKKRYLEKKKKRKFGKKIRYESRKSSADTKKRLKGRFTKAD 356
                  7899*************************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.001452IPR000315B-box-type zinc finger
CDDcd000210.00136752No hitNo description
PfamPF062039.9E-15313355IPR010402CCT domain
PROSITE profilePS5101713.652313355IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 370 aa     Download sequence    Send to blast
MHIMSPPMCD HCNMGKAIVY CKTHLASVCS QCDRKFHHYV TMDSPDHSRL LLCEKCVLHA  60
ADVQCLEQGL CLCQTCVPNA NVTSGIHFCN VPNNHSGYSF PRDLDLDSFS SSLSSSLTDL  120
SWGYPFVPLP PKNGDSSSSS SIIFQNFDNH TKNISDQRGQ MLQPDDMDNS KDFSYSGFEP  180
YKTKDIENVW LNNFDDDKSV LDQKEYLSRE ELILTDQLIE EIMKHNEETI TEVIHQDYNI  240
EALANASCEG YNTNQMIQSK AKEETNNNVG KLFPNAHIHD ECRPSQLILT DVDEMLTWEE  300
QLLESPIYTP QNRLEAKKRY LEKKKKRKFG KKIRYESRKS SADTKKRLKG RFTKADAEYD  360
YDPRANNTNK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1322327KKKKRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018466571.10.0PREDICTED: putative zinc finger protein CONSTANS-LIKE 11, partial
TrEMBLA0A078FDD10.0A0A078FDD1_BRANA; BnaC08g44180D protein
TrEMBLA0A0D3DYX00.0A0A0D3DYX0_BRAOL; Uncharacterized protein
STRINGBo8g115170.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1355245
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07650.47e-13CONSTANS-like 9