PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC1782_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family G2-like
Protein Properties Length: 428aa    MW: 47790 Da    PI: 5.6533
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC1782_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like99.52.3e-31231285155
     G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                 kpr+rWtpeLHe+F++ v++L G+ekAtPk++l+lm+v+gLt++hvkSHLQkYRl
  RrC1782_p1 231 KPRMRWTPELHESFLKSVDKLEGPEKATPKAVLKLMNVEGLTIYHVKSHLQKYRL 285
                 79****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512949.433228288IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.7E-29229286IPR009057Homeodomain-like
SuperFamilySSF466899.85E-17230286IPR009057Homeodomain-like
TIGRFAMsTIGR015578.4E-24231286IPR006447Myb domain, plants
PfamPF002496.0E-8233284IPR001005SANT/Myb domain
PfamPF143792.5E-22321368IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 428 aa     Download sequence    Send to blast
MNRHRLVSTS QACSSSLSPP VHNFLNVQPE NPKSPFIRSH SPDSPGQLWP PKNNSQGTFS  60
RSSTFCTNLY VSSSSSSEAQ KHLGNTLPFL PDPSSNSQPS SAVEESARSP SIFSEDLSNP  120
FDGDNVRDFF NLSGDACSAG GFHDLDCSND SYCLSDQMEL QFLSDELELA ITDRSETPRL  180
DEIYETPLPS SSNPVTGLSQ SQRCVTGAVT IEAVSSHNSP GSAAAAASNQ KPRMRWTPEL  240
HESFLKSVDK LEGPEKATPK AVLKLMNVEG LTIYHVKSHL QKYRLAKHIP EKKEEKKNVN  300
TEEKKLALSN SEADERKKGA MQLTEALRMQ MEVQKQLHEQ LEVQRVLQLR IEEHAKYLEK  360
MLEEQRKTGM LMSSSSSQTS DCQKNMSKNE ESLPQTKNIA SETEEDKCES PQKRRRVENN  420
TESEDPER
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A3e-23231288259Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B3e-23231288259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A3e-23231288259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C3e-23231288259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D3e-23231288259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F3e-23231288259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H3e-23231288259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J3e-23231288259Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1412416KRRRV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018485879.10.0PREDICTED: myb family transcription factor PHL6-like isoform X2
SwissprotQ949U20.0PHL6_ARATH; Myb family transcription factor PHL6
TrEMBLA0A3P6A3G20.0A0A3P6A3G2_BRACM; Uncharacterized protein
STRINGBo3g065290.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM67862744
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13040.20.0G2-like family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Nguyen HT, et al.
    A Transcription Factor γMYB1 Binds to the P1BS cis-Element and Activates PLA2-γ Expression with its Co-Activator γMYB2.
    Plant Cell Physiol., 2016. 57(4): p. 784-97
    [PMID:26872838]