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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
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| TF ID |
RrC17833_p1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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| Family |
GRAS |
| Protein Properties |
Length: 304aa MW: 34247.4 Da PI: 6.9957 |
| Description |
GRAS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| RrC17833_p1 | genome | MSU | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GRAS | 344.8 | 1.4e-105 | 3 | 297 | 80 | 374 |
GRAS 80 alklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvp 175
++ +++e++P+ kf++ +aN aIleav+ge+rvHiiDf+i qG Q++ L+++La+Rp+gpp lR+Tgv++ +s + l +ge+La++A+++gvp
RrC17833_p1 3 YMGVLYEICPYWKFAYTAANAAILEAVAGEKRVHIIDFQIAQGSQYMFLINELAKRPGGPPLLRVTGVDDTQSRyaRGGGLGLIGEKLANMAKSCGVP 100
56689*****************************************************************999899999******************* PP
GRAS 176 fefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdslea 273
f+f+ ++ + +++ e+L v+pg a++Vn+ + lh+++desvs+e++rd++L+l+ksl P++v++veqe+++n+++Fl rf+e+l+yy+a+f+s++a
RrC17833_p1 101 FQFHD-AVMSGCKVQREHLGVEPGFAVVVNFPYVLHHMPDESVSVENHRDRLLHLIKSLGPRLVTLVEQESNTNTSPFLSRFVETLDYYTAMFESIDA 197
*****.7889999************************************************************************************* PP
GRAS 274 klpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvS 371
pr++++ri+ E+++++r+ivn++ace+ er+erhe l+kWr r+++aGF p+ ++aa a+ +l+ ++++ y++ e++g+l+l Wk+rp+ ++S
RrC17833_p1 198 ARPRDDKQRISAEQHCVARDIVNMIACEEGERVERHEVLGKWRVRMMMAGFMGWPVVSSAAFPASEMLKGYDEN-YKLGESEGALYLFWKRRPMATCS 294
************************************************************************55.*********************** PP
GRAS 372 aWr 374
aW+
RrC17833_p1 295 AWK 297
**8 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 304 aa
Download sequence Send
to blast |
MSYMGVLYEI CPYWKFAYTA ANAAILEAVA GEKRVHIIDF QIAQGSQYMF LINELAKRPG 60
GPPLLRVTGV DDTQSRYARG GGLGLIGEKL ANMAKSCGVP FQFHDAVMSG CKVQREHLGV 120
EPGFAVVVNF PYVLHHMPDE SVSVENHRDR LLHLIKSLGP RLVTLVEQES NTNTSPFLSR 180
FVETLDYYTA MFESIDAARP RDDKQRISAE QHCVARDIVN MIACEEGERV ERHEVLGKWR 240
VRMMMAGFMG WPVVSSAAFP ASEMLKGYDE NYKLGESEGA LYLFWKRRPM ATCSAWKPNP 300
NQNM
|
| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription factor that acts as a positive regulator of continuous red light signals downstream of phytochrome B (phyB). Required for the regulation of hypocotyl elongation during de-etiolation. May be required to modulate phytochrome A (phyA) signal transduction in a phyB-independent way. {ECO:0000269|PubMed:16680434}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: By osmotic and cold stresses, and UV-A/B. {ECO:0000269|PubMed:16680434}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AC232568 | 0.0 | AC232568.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH122A22, complete sequence. |
