PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC17973_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family Dof
Protein Properties Length: 196aa    MW: 21875.2 Da    PI: 9.1859
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC17973_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof120.27.3e-381775260
       zf-Dof  2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkk 60
                 +++ ++cprC+s+ntkfCyynnysl+qPry+Ck+CrryWt+GG+lrnvPvGgg+rknkk
  RrC17973_p1 17 PQEPRNCPRCNSSNTKFCYYNNYSLAQPRYLCKSCRRYWTEGGSLRNVPVGGGSRKNKK 75
                 67899****************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074782.0E-281673IPR003851Zinc finger, Dof-type
PfamPF027014.0E-331975IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.4442175IPR003851Zinc finger, Dof-type
PROSITE patternPS0136102359IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 196 aa     Download sequence    Send to blast
MIMDAEKKMI TTMTSRPQEP RNCPRCNSSN TKFCYYNNYS LAQPRYLCKS CRRYWTEGGS  60
LRNVPVGGGS RKNKKLPLLQ PNSSSSSPTK NLPDLNPPFV FTSTSNPSKS THQNNDLSLS  120
FSSPTMRDKE AQGHYDRNKQ EISGGGSKLM FPYGNGDEHH HDHERHDDGN KTRESGSSNE  180
LWSGIILGGD SGGPTW
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4936661e-105AB493666.1 Arabidopsis thaliana At4g00940 mRNA for hypothetical protein, partial cds, clone: RAAt4g00940.
GenBankAL1614911e-105AL161491.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 3.
GenBankCP0026871e-105CP002687.1 Arabidopsis thaliana chromosome 4 sequence.
GenBankTM018A101e-105AF013294.1 Arabidopsis thaliana BAC TM018A10.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018463356.11e-123PREDICTED: dof zinc finger protein DOF4.1
RefseqXP_018463357.11e-123PREDICTED: dof zinc finger protein DOF4.1
RefseqXP_018463358.11e-123PREDICTED: dof zinc finger protein DOF4.1
SwissprotQ9M1617e-94DOF41_ARATH; Dof zinc finger protein DOF4.1
TrEMBLR0HC391e-101R0HC39_9BRAS; Uncharacterized protein
STRINGXP_006288360.11e-102(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM146951720
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00940.12e-78Dof family protein