PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RrC17984_p2

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

Protein Properties

Length: 223aa MW: 25207.1 Da PI: 4.6828

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC17984_p2	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	42.3	1.3e-13	32	95	20	97
HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS B3 20 kkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 +f+++h + l + d s + W+vkl ++++ l++GW+eF+ka+ ++gD +vF++dg++ f +v v RrC17984_p2 32 DEFLRNHTK------VLLISDASDKIWKVKL--DGNR----LAGGWEEFAKAHSFRDGDALVFRHDGDEIF--HVAVS 95 556655543......378889********..9999....**********************999988..66665 PP
2	B3	35.9	1.4e-11	171	212	58	99
EEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 58 ryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 y l+ GW+e++kang+k++D++v++l++++ +++v+k+++k RrC17984_p2 171 PYSLRHGWREMCKANGVKVNDSFVLELIWEDAANPVLKFCSK 212 3899************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01019	7.8E-13	7	98	IPR003340	B3 DNA binding domain
Pfam	PF02362	2.3E-8	33	92	IPR003340	B3 DNA binding domain
SuperFamily	SSF101936	4.12E-13	33	95	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	4.5E-13	34	95	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	1.09E-9	34	94	No hit	No description
PROSITE profile	PS50863	11.279	42	98	IPR003340	B3 DNA binding domain
SMART	SM01019	0.065	112	213	IPR003340	B3 DNA binding domain
Pfam	PF02362	3.7E-10	170	212	IPR003340	B3 DNA binding domain
Gene3D	G3DSA:2.40.330.10	2.4E-7	171	212	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	1.47E-7	172	213	IPR015300	DNA-binding pseudobarrel domain
PROSITE profile	PS50863	7.246	174	212	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 223 aa Download sequence Send to blast
MLSCNKIVVL FSWPYCVRLD PFIELYGKRL GDEFLRNHTK VLLISDASDK IWKVKLDGNR 60 LAGGWEEFAK AHSFRDGDAL VFRHDGDEIF HVAVSSPRSD SCGTSHHASP SFVDTDDAES 120 DDEYSESDDE EEECDDDAGS EDCCDSGDIL VNKNKKTEGG FPCFLRARVT PYSLRHGWRE 180 MCKANGVKVN DSFVLELIWE DAANPVLKFC SKVYHKHNFV LIS

Functional Description ? help Back to Top
Source	Description
UniProt	May play a role in flower development. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018460925.1	1e-61	PREDICTED: B3 domain-containing protein REM1-like
Swissprot	O65098	3e-28	REM1_BRAOB; B3 domain-containing protein REM1
TrEMBL	A0A3P6C2D8	5e-50	A0A3P6C2D8_BRACM; Uncharacterized protein
STRING	Bra010228.1-P	2e-50	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM204	22	261

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G31610.1	7e-28	B3 family protein

Publications ? help Back to Top
Franco-Zorrilla JM, et al. Identification of genes specifically expressed in cauliflower reproductive meristems. Molecular characterization of BoREM1. Plant Mol. Biol., 1999. 39(3): p. 427-36 [PMID:10092172]