PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RrC17_p14

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

G2-like

Protein Properties

Length: 246aa MW: 27725.9 Da PI: 8.518

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC17_p14	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	102.1	3.5e-32	24	77	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWtpeLH++Fv+av+ LGG+ kAtPk +l++m+vkgLt++hvkSHLQ+YR RrC17_p14 24 PRLRWTPELHRSFVHAVDLLGGQYKATPKLVLKIMDVKGLTISHVKSHLQMYRG 77 8****************************************************5 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.6E-29	20	77	IPR009057	Homeodomain-like
PROSITE profile	PS51294	10.136	20	80	IPR017930	Myb domain
SuperFamily	SSF46689	3.05E-15	24	76	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.2E-22	24	76	IPR006447	Myb domain, plants
Pfam	PF00249	7.4E-8	25	76	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 246 aa Download sequence Send to blast
MGKCGRSSDG GISGVRPYVR SPVPRLRWTP ELHRSFVHAV DLLGGQYKAT PKLVLKIMDV 60 KGLTISHVKS HLQMYRGSRP TLLGRLEESS SSSPRRRRRQ DNGDQLHDNL SEHARNDCLF 120 GFHSFSFREQ TSGTDNDVDD FLNITNMART KTFAGNGESI KFQPHHFLEA QSMKSNMENE 180 HEEEELSLSL SLNHPPNHEQ RWRSNASSSL SEASEALSSP FTSRDCFASS KIDLNLNLSF 240 PSLLRS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	7e-20	25	79	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	7e-20	25	79	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	7e-20	25	79	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	7e-20	25	79	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AJ630486	0.0	AJ630486.1 Arabidopsis thaliana mRNA for hypothetical protein, clone At1g14600.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018482081.1	1e-180	PREDICTED: putative Myb family transcription factor At1g14600 isoform X1
Swissprot	Q700D9	1e-116	MYBF_ARATH; Putative Myb family transcription factor At1g14600
TrEMBL	A0A397YWD9	1e-145	A0A397YWD9_BRACM; Uncharacterized protein
STRING	Bo5g019810.1	1e-143	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4694	18	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G14600.1	1e-103	G2-like family protein