PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC17_p7
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family BBR-BPC
Protein Properties Length: 279aa    MW: 31234.6 Da    PI: 10.2267
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC17_p7genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind340.25e-10412791301
  GAGA_bind   1 mdddgsrernkgyyepa.aslkenlglqlmssiaerdaki....rernlalsekkaavaerd......maflqrdkalaernkalverdnkllalllven 89 
                mdddg+  rn+gyyepa a++k nlglqlm si +r++k+    r+ nl + ++++++++ +      m++    +++++      + ++k++++l+v++
   RrC17_p7   1 MDDDGF--RNWGYYEPAaATFKGNLGLQLMPSI-DRNTKPflpgRDPNLMIGQQNGPYHHPEpppinnMSY----NWINQ------QLKDKFFNMLPVTT 87 
                99**99..9*******999**************.9**************8899999999988999988999....*****......7899*******999 PP

  GAGA_bind  90 slasalpvgvqvlsgtksidslqqlsepqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkkesaderska 189
                +     p++ ++l++t+s+ s+++ +++ +e+ +v+      +e+++i++++++ k ++k+     ++ +k+kk +k+k+++ k  +k++++++ +r+k 
   RrC17_p7  88 A-----PHYGNILPETSSAPSMRH-HHQTTEEYPVK------SEQEEIVQTNKKRKPNAKP-----GAGTKAKKPRKPKEEE-K--DKSTNNGNVSRVKP 167
                7.....99************8887.66666666666......3344555544444444444.....4555666666666632.2..223333333799** PP

  GAGA_bind 190 ekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhW 289
                 kks+d+v+ngv++D+s+lPvPvC+CtGa++qCY+WG+GGWqSaCCtt+iS+yPLP+stkrrgaRi+grKmSqgafkk+LekLa++G++++  +DLk+hW
   RrC17_p7 168 AKKSVDFVINGVNMDISGLPVPVCTCTGAPQQCYRWGCGGWQSACCTTNISMYPLPMSTKRRGARISGRKMSQGAFKKVLEKLASDGFNFGSSIDLKTHW 267
                **************************************************************************************************** PP

  GAGA_bind 290 AkHGtnkfvtir 301
                A+HGtnkfvtir
   RrC17_p7 268 ARHGTNKFVTIR 279
                ***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012269.8E-1581279IPR010409GAGA-binding transcriptional activator
PfamPF062171.1E-951279IPR010409GAGA-binding transcriptional activator
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    Send to blast
MDDDGFRNWG YYEPAAATFK GNLGLQLMPS IDRNTKPFLP GRDPNLMIGQ QNGPYHHPEP  60
PPINNMSYNW INQQLKDKFF NMLPVTTAPH YGNILPETSS APSMRHHHQT TEEYPVKSEQ  120
EEIVQTNKKR KPNAKPGAGT KAKKPRKPKE EEKDKSTNNG NVSRVKPAKK SVDFVINGVN  180
MDISGLPVPV CTCTGAPQQC YRWGCGGWQS ACCTTNISMY PLPMSTKRRG ARISGRKMSQ  240
GAFKKVLEKL ASDGFNFGSS IDLKTHWARH GTNKFVTIR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1894991e-158AC189499.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB086M23, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018443109.10.0PREDICTED: protein BASIC PENTACYSTEINE2-like
SwissprotQ9LDE21e-156BPC2_ARATH; Protein BASIC PENTACYSTEINE2
TrEMBLA0A3P5YW191e-174A0A3P5YW19_BRACM; Uncharacterized protein
STRINGBra026196.1-P1e-173(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM28932769
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14685.31e-155basic pentacysteine 2
Publications ? help Back to Top
  1. Brand LH,Kirchler T,Hummel S,Chaban C,Wanke D
    DPI-ELISA: a fast and versatile method to specify the binding of plant transcription factors to DNA in vitro.
    Plant Methods, 2010. 6: p. 25
    [PMID:21108821]
  2. Simonini S,Kater MM
    Class I BASIC PENTACYSTEINE factors regulate HOMEOBOX genes involved in meristem size maintenance.
    J. Exp. Bot., 2014. 65(6): p. 1455-65
    [PMID:24482368]