PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC18028_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family C3H
Protein Properties Length: 201aa    MW: 22726.6 Da    PI: 9.091
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC18028_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH499.6e-16128152226
                  -S---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                  ktelC+ +++tG C+yGd+C+FaHg
  RrC18028_p1 128 KTELCNKWQQTGACPYGDNCQFAHG 152
                  9***********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.102.8E-19121159IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.02E-11124158IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.765126154IPR000571Zinc finger, CCCH-type
SMARTSM003562.1E-9126153IPR000571Zinc finger, CCCH-type
PfamPF006427.8E-13128152IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.66E-9160195IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.8E-13160193IPR000571Zinc finger, CCCH-type
SMARTSM003564.3E-5164191IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.972164192IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0051511Biological Processnegative regulation of unidimensional cell growth
GO:1901347Biological Processnegative regulation of secondary cell wall biogenesis
GO:0003729Molecular FunctionmRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 201 aa     Download sequence    Send to blast
MTDLDSLRRE NDALRQENVD LLKLIHISAS SSSSSSSVSP PPFRNRQQIS DHRQVRSSNP  60
ERNSLPKSIS VRSPGYLKMM NQGSHGYGGA NRQTSQLGSD SVTQKVCVPT KGERDALELE  120
VYRQGMTKTE LCNKWQQTGA CPYGDNCQFA HGIDELRPVI RHPRYKTEVC RMIVTGATCP  180
YGHRCHFRHS LTEQERMLLT H
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1rgo_A1e-22128193570Butyrate response factor 2
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013588830.11e-128PREDICTED: zinc finger CCCH domain-containing protein 14 isoform X1
RefseqXP_013588831.11e-128PREDICTED: zinc finger CCCH domain-containing protein 14 isoform X1
RefseqXP_013588832.11e-128PREDICTED: zinc finger CCCH domain-containing protein 14 isoform X1
RefseqXP_013588833.11e-128PREDICTED: zinc finger CCCH domain-containing protein 14 isoform X1
RefseqXP_013699289.11e-127zinc finger CCCH domain-containing protein 14-like isoform X1
RefseqXP_013699290.11e-127zinc finger CCCH domain-containing protein 14-like isoform X1
RefseqXP_022560292.11e-127zinc finger CCCH domain-containing protein 14-like isoform X1
SwissprotQ9C9N35e-92C3H14_ARATH; Zinc finger CCCH domain-containing protein 14
TrEMBLA0A078IPB91e-127A0A078IPB9_BRANA; BnaC06g27780D protein
TrEMBLA0A3P6HCN11e-127A0A3P6HCN1_BRAOL; Uncharacterized protein
STRINGBra004189.1-P1e-123(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM106232533
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66810.15e-90C3H family protein