PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC18109_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ERF
Protein Properties Length: 145aa    MW: 16123 Da    PI: 6.5102
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC18109_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP240.28.5e-1391141155
          AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                  +++kGVr ++ +g+W AeI+dps+   ++r +lg+f t ++A + +++a  +l g
  RrC18109_p1  91 KKHKGVRKKP-SGKWSAEIWDPSI---KARRWLGTFPTYDKAVQSYEEAEYELAG 141
                  589****999.7*********965...69*********99*********999865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.53E-1991145No hitNo description
SuperFamilySSF541713.53E-1292143IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.1E-1692143IPR001471AP2/ERF domain
PROSITE profilePS5103217.68892145IPR001471AP2/ERF domain
SMARTSM003801.8E-1092145IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 145 aa     Download sequence    Send to blast
MNNSEDFQSY VQNENLTPVS QPSYLTRDQE HEIIVSTLRQ VISSPGGDTS SSNWIASESL  60
PPPDAGPCPI CGVTGCYGCA FPRPVEITKE KKHKGVRKKP SGKWSAEIWD PSIKARRWLG  120
TFPTYDKAVQ SYEEAEYELA GRRSA
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018436240.11e-103PREDICTED: putative ethylene-responsive transcription factor ERF121
SwissprotQ9FGC91e-65EF121_ARATH; Putative ethylene-responsive transcription factor ERF121
TrEMBLA0A397YK602e-98A0A397YK60_BRACM; Uncharacterized protein
TrEMBLM4D6L42e-98M4D6L4_BRARP; Uncharacterized protein
STRINGBra012123.1-P3e-99(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM34721562
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67010.16e-68ERF family protein