PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RrC18345_p1

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

NAC

Protein Properties

Length: 231aa MW: 26608 Da PI: 8.6774

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC18345_p1	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	168.3	2.6e-52	6	134	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskk 96 lppGfrFhPtdeel+++yLk+kveg ++el evi+ +d+yk++Pw+Lp k + +++ ew+fF+++dkky++g r+nr tk+gyWkatgkd+++++++ RrC18345_p1 6 LPPGFRFHPTDEELIDYYLKRKVEGIEIEL-EVIPVIDLYKFDPWELPdKsFLPNRDMEWFFFCSKDKKYPNGFRTNRGTKAGYWKATGKDRKITCRS 102 79**************************.99**********96435556888************************************ PP NAM 97 gelvglkktLvfykgrapkgektdWvmheyrl 128 + ++g +ktLvfykgrap g +t+W+mheyrl RrC18345_p1 103 SPTIGYRKTLVFYKGRAPLGDRTSWLMHEYRL 134 ****************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	6.28E-59	3	159	IPR003441	NAC domain
PROSITE profile	PS51005	57.694	6	159	IPR003441	NAC domain
Pfam	PF02365	1.6E-28	7	134	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 231 aa Download sequence Send to blast
MGSSCLPPGF RFHPTDEELI DYYLKRKVEG IEIELEVIPV IDLYKFDPWE LPDKSFLPNR 60 DMEWFFFCSK DKKYPNGFRT NRGTKAGYWK ATGKDRKITC RSSPTIGYRK TLVFYKGRAP 120 LGDRTSWLMH EYRLCDDESS SQDSQSFKGT FVLCRVAKKN EIKSNSKIQR NLNEQTLGSG 180 ESSGYSSRVT SPSRDDTMPF HSFVNPVSTE TDSSNIWISP DFILDSSKRV P

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-49	6	160	17	166	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-49	6	160	17	166	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-49	6	160	17	166	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-49	6	160	17	166	NO APICAL MERISTEM PROTEIN
3swm_A	1e-49	6	160	20	169	NAC domain-containing protein 19
3swm_B	1e-49	6	160	20	169	NAC domain-containing protein 19
3swm_C	1e-49	6	160	20	169	NAC domain-containing protein 19
3swm_D	1e-49	6	160	20	169	NAC domain-containing protein 19
3swp_A	1e-49	6	160	20	169	NAC domain-containing protein 19
3swp_B	1e-49	6	160	20	169	NAC domain-containing protein 19
3swp_C	1e-49	6	160	20	169	NAC domain-containing protein 19
3swp_D	1e-49	6	160	20	169	NAC domain-containing protein 19
4dul_A	1e-49	6	160	17	166	NAC domain-containing protein 19
4dul_B	1e-49	6	160	17	166	NAC domain-containing protein 19
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator involved in the positive regulation of abscisic acid (ABA) responsive genes. Acts as a positive factor of ABA-mediated responses. Involved in the transcriptional activation of ABA-inducible genes in response to dehydration and osmotic stresses. Plays a positive role in both stomatal closure and water loss under dehydration stress conditions. Acts synergistically with ABF2 to activate the dehydration stress-response factor RD29A transcription. Binds to the consensus core cis-acting elements 5'-CGTA-3' and 5'-CACG-3' at the RD29A promoter (PubMed:24285786). Involved in hypocotyl graft union formation. Required for the auxin-mediated promotion of vascular tissue proliferation during hypocotyl graft attachment (PubMed:25182467). {ECO:0000269\|PubMed:24285786, ECO:0000269\|PubMed:25182467}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by abscisic acid (ABA), dehydration and osmotic stress. {ECO:0000269\|PubMed:24285786}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018461558.1	1e-157	PREDICTED: NAC domain-containing protein 86-like
Swissprot	Q9LS24	1e-140	NAC96_ARATH; NAC domain-containing protein 96
TrEMBL	A0A3P6E1T8	1e-153	A0A3P6E1T8_BRAOL; Uncharacterized protein
STRING	Bra025012.1-P	1e-149	(Brassica rapa)
STRING	XP_006398354.1	1e-148	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2151	27	77

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G46590.1	1e-136	NAC domain containing protein 96

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Matsuoka K, et al. Differential Cellular Control by Cotyledon-Derived Phytohormones Involved in Graft Reunion of Arabidopsis Hypocotyls. Plant Cell Physiol., 2016. 57(12): p. 2620-2631 [PMID:27986917]