PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC1838_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family C3H
Protein Properties Length: 446aa    MW: 47373.6 Da    PI: 8.722
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC1838_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH30.85e-105578427
                ---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH  4 elCrffartGtCkyGdrCkFaHgp 27
                + C +++rtG C y +rC+F+H+p
  RrC1838_p1 55 PDCAYYMRTGVCGYASRCRFNHPP 78
                78********************97 PP
2zf-CCCH38.71.7e-12101123527
                 --SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH   5 lCrffartGtCkyGdrCkFaHgp 27 
                 +C+f+++tGtCk+G++CkF+H++
  RrC1838_p1 101 PCQFYLKTGTCKFGASCKFNHPR 123
                 7********************96 PP
3zf-CCCH36.77.2e-12145169327
                 S---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                   +C++f++tG+Ck+G +CkF+H++
  RrC1838_p1 145 VNECSYFLKTGQCKFGITCKFHHPQ 169
                 678********************97 PP
4zf-CCCH37.93e-12279305127
                 --S---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                 +++++C+++++tG Ck+G +CkF+H++
  RrC1838_p1 279 PGEPECQYYLKTGDCKFGTSCKFHHPR 305
                 5799*********************96 PP
5zf-CCCH27.17.4e-09330350626
                 -SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   6 CrffartGtCkyGdrCkFaHg 26 
                 C f+ ++G+Ck+G++CkF H+
  RrC1838_p1 330 CTFYVQNGFCKFGSTCKFDHP 350
                 ********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010312.4835179IPR000571Zinc finger, CCCH-type
SMARTSM003564.1E-45178IPR000571Zinc finger, CCCH-type
PfamPF006427.7E-75578IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.22E-55679IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.6E-45777IPR000571Zinc finger, CCCH-type
SMARTSM003569.5E-696123IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.01E-699124IPR000571Zinc finger, CCCH-type
PfamPF006423.9E-10101123IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.943101124IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.9E-6101123IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.117142170IPR000571Zinc finger, CCCH-type
SMARTSM003563.3E-5142169IPR000571Zinc finger, CCCH-type
PfamPF006422.1E-9144169IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.05E-5145170IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.2E-4148168IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.99278306IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-5278305IPR000571Zinc finger, CCCH-type
PfamPF006422.7E-9280305IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.18E-5283305IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.7E-5284305IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.854324352IPR000571Zinc finger, CCCH-type
SMARTSM003565.2E-5324351IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.1E-6326352IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.6E-4329349IPR000571Zinc finger, CCCH-type
PfamPF006421.8E-6330350IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 446 aa     Download sequence    Send to blast
MDMYGRNPTA MNGSHASAPH WTGPGDAAGL QAESSMWGGL GLGKSETYPE RAGAPDCAYY  60
MRTGVCGYAS RCRFNHPPDR ATVEATVRAT GQYPERLGAL PCQFYLKTGT CKFGASCKFN  120
HPRNAGGSVT HVPLNIYGYP VRQGVNECSY FLKTGQCKFG ITCKFHHPQP AAAAAAATAT  180
LPPPASAPQF YPSVQQHHSL MPAPPSSNLR PLLPGSFMQG PYAPMLLTPP GAPVSPALSP  240
GAAQQATSLY GVTQLSSTTP GVYPSGGLVQ KEESFPERPG EPECQYYLKT GDCKFGTSCK  300
FHHPRLRVPP TPNCVLSSIG LPLRPGVQCC TFYVQNGFCK FGSTCKFDHP VGVIRYNPSA  360
SSLADAPVAP FPLLASSSSS AAELISGDDP YLSTSRSASN NISAGLIFSQ SGVSVPFNDL  420
QLSTQTSLSL TGTRITRQGR EIRRSF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0303918e-97BT030391.1 Arabidopsis thaliana At2g47850 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018441444.10.0PREDICTED: zinc finger CCCH domain-containing protein 32 isoform X1
SwissprotQ84W910.0C3H32_ARATH; Zinc finger CCCH domain-containing protein 32
TrEMBLA0A3P6C2I10.0A0A3P6C2I1_BRAOL; Uncharacterized protein
STRINGBra004427.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM59122647
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47850.30.0C3H family protein