PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC1838_p3
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family DBB
Protein Properties Length: 232aa    MW: 25749.7 Da    PI: 4.976
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC1838_p3genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box18.83.3e-061547234
    zf-B_box  2 eerkCpeHeekelqlfCedCqqllCedClleeH 34
                + r+C+ +e+  +  +C+ ++  lC  C  + H
  RrC1838_p3 15 QHRICDYCESSVALVYCKADSAKLCLACDNKVH 47
                6789*************************9999 PP
2zf-B_box21.16.5e-0760102442
    zf-B_box   4 rkCpeHeekelqlfCedCqqllCedClleeHkg....Htvvpl 42 
                   C+ +++ + + fC + ++ lC++C  ++H +    H+++pl
  RrC1838_p3  60 LLCDSCHDSPSSVFCDTESSVLCQNCDWQHHTSssslHSRRPL 102
                 57***************************88668899998875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.0111461IPR000315B-box-type zinc finger
SMARTSM003367.1E-121461IPR000315B-box-type zinc finger
CDDcd000212.25E-51761No hitNo description
PROSITE profilePS5011910.23957102IPR000315B-box-type zinc finger
CDDcd000211.90E-46188No hitNo description
SMARTSM003360.4262102IPR000315B-box-type zinc finger
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MERGGEEEEG SHQQQHRICD YCESSVALVY CKADSAKLCL ACDNKVHVTN QLFSKHFRSL  60
LCDSCHDSPS SVFCDTESSV LCQNCDWQHH TSSSSLHSRR PLEGFSGCPS VTELLALVGL  120
DDLTDKALFL PHPGGSDQTP PQIVSLNDLV ASDGSSHNYR AMDVPPLPKN RHATCGRHKE  180
EMIRQLRELS RSEPSCMKYE TLDAELDTSG FLFLEPGNDL FSSTFESQIL IV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1896341e-179AC189634.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrS004I08, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009142494.11e-153PREDICTED: zinc finger protein CONSTANS-LIKE 13
SwissprotO822561e-106COL13_ARATH; Zinc finger protein CONSTANS-LIKE 13
TrEMBLA0A397Z5S41e-154A0A397Z5S4_BRACM; Uncharacterized protein
STRINGBra004423.1-P1e-153(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM81482736
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47890.21e-100B-box type zinc finger protein with CCT domain
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]