PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC1842_p4
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bZIP
Protein Properties Length: 391aa    MW: 41961.2 Da    PI: 7.204
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC1842_p4genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_169.55.4e-22292354163
                 XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
      bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                 ++e+kr++rkq+NRe+ArrsR+RK+ae++eL+++++ L  eN +L+ e+++lk ++++l se+
  RrC1842_p4 292 DREVKRQKRKQSNRESARRSRLRKQAECDELAQRAELLNDENASLRAEINRLKSQCEELASEN 354
                 5899********************************************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF077778.2E-2722124IPR012900G-box binding protein, multifunctional mosaic region
PfamPF165962.0E-9144227No hitNo description
Gene3DG3DSA:1.20.5.1705.6E-16289351No hitNo description
SMARTSM003381.8E-20292356IPR004827Basic-leucine zipper domain
PfamPF001706.6E-20293354IPR004827Basic-leucine zipper domain
PROSITE profilePS5021712.967294357IPR004827Basic-leucine zipper domain
SuperFamilySSF579594.06E-11295351No hitNo description
CDDcd147022.63E-24297347No hitNo description
PROSITE patternPS000360299314IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 391 aa     Download sequence    Send to blast
MFGVLSRSHR ELVGVGIIMA SNNEMEKSSK DKEPTTPPPP SSSAPPSSQE PSSAVSAAGM  60
ATPDWSGFQA YSPMPPHGFV ASSPQPHPYM WGVQHMMPPY GTPPPHPYVT MYPPGGMYGH  120
PSMPPGSYPY SAYAMPSPNG MTEASGNTTG GTEGDAKQPE VKEKLPIKRS RGSLGTSENG  180
GSSANAPRNG TPVSQTVPIM PMPAAGPPTN LNIGMEYWGA PPTSAAIPGM HGKATTSSVP  240
GVVPPVSRDG GHSQPWLQVC ALLCSYSFSL ILRFKVCDPQ NLKMLLSCNQ DDREVKRQKR  300
KQSNRESARR SRLRKQAECD ELAQRAELLN DENASLRAEI NRLKSQCEEL ASENTSLKDQ  360
LLSFPSLEGI NMDKGDQEPE TSQTVVAETK G
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1308314RRSRLRK
2308315RRSRLRKQ
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds to the G-box motif (5'-CACGTG-3') and other cis-acting elements with 5'-ACGT-3' core, such as Hex, C-box and as-1 motifs. Possesses high binding affinity to G-box, much lower affinity to Hex and C-box, and little affinity to as-1 element (PubMed:18315949). G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control (Probable). Binds to the G-box motif 5'-CACGTG-3' of LHCB2.4 (At3g27690) promoter. May act as transcriptional repressor in light-regulated expression of LHCB2.4. Binds DNA as monomer. DNA-binding activity is redox-dependent (PubMed:22718771). {ECO:0000269|PubMed:18315949, ECO:0000269|PubMed:22718771, ECO:0000305|PubMed:18315949}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3531641e-147AK353164.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-26-I15.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018439772.10.0PREDICTED: bZIP transcription factor 16
RefseqXP_018439773.10.0PREDICTED: bZIP transcription factor 16
SwissprotQ501B21e-168BZP16_ARATH; bZIP transcription factor 16
TrEMBLA0A3P6BWU71e-178A0A3P6BWU7_BRAOL; Uncharacterized protein
STRINGBo4g038560.11e-176(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM37012557
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35530.11e-136basic region/leucine zipper transcription factor 16
Publications ? help Back to Top
  1. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]