PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC1846_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family GATA
Protein Properties Length: 371aa    MW: 41517.6 Da    PI: 6.5133
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC1846_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA35.41.5e-111240835
        GATA  8 k.TplWRrgpdgnktLCnaCGlyyrkkgl 35
                + TplWR+gp  ++ LCnaCG ++r kg+
  RrC1846_p1 12 NcTPLWRNGPPEKPVLCNACGSRWRTKGS 40
                34********88888***********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004010.0023654IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.104.3E-81140IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.24E-111150No hitNo description
PfamPF003203.7E-91240IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.57E-61245No hitNo description
PfamPF139193.6E-10264363IPR028020ASX homology domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 371 aa     Download sequence    Send to blast
MNFDYMLQIL TNCTPLWRNG PPEKPVLCNA CGSRWRTKGS LVNYTPLHSR ADAEANQDHH  60
HHRYQKMKSI SVNNNYKETK KRKAIQEPVL EFNYGFKKAV VEEEASNRSS SGSAVSNSES  120
CAAQFSSADG SSELTGPSRS NAWDTTVPCK RRTCVGRPKT SSVEKLTQDL YNILQEQQSS  180
CPSEDDLLFE NEMLSMVSVE IGHGSVLMRN PHSFAREEES EEASSLSSVE NKSSISDAYS  240
HSVGAVRGGS EFVGQAIKLE QLKRTKSQTG RVHVLGSHSS PLCSIDLKDV FNFEEFIEQF  300
TEEEQKKMMK LLPQIDSVNI PDSLRMMFES AQFKENFSLF QKLIADGVFE VPSSSGTKLE  360
ELRAFKKLAL S
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3532400.0AK353240.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-27-J12.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018448301.10.0PREDICTED: GATA transcription factor 26
SwissprotQ8W4H10.0GAT26_ARATH; GATA transcription factor 26
TrEMBLM4FGD90.0M4FGD9_BRARP; Uncharacterized protein
STRINGBra040167.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16062785
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17570.21e-172GATA transcription factor 26