PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RrC1865_p4

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

G2-like

Protein Properties

Length: 288aa MW: 31139.6 Da PI: 6.0557

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC1865_p4	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	105.5	3.1e-33	15	69	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+rlrWt+eLHerFv+ v+qLGG+++AtPk +l++m+v+gLt++hvkSHLQkYRl RrC1865_p4 15 KQRLRWTHELHERFVDSVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRL 69 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	13.786	12	72	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.8E-31	14	70	IPR009057	Homeodomain-like
SuperFamily	SSF46689	4.12E-17	14	69	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	9.5E-25	15	70	IPR006447	Myb domain, plants
Pfam	PF00249	3.8E-8	17	68	IPR001005	SANT/Myb domain
Pfam	PF14379	1.5E-23	101	147	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 288 aa Download sequence Send to blast
MEGDNGGNNS SHASKQRLRW THELHERFVD SVAQLGGPDR ATPKGVLRVM GVQGLTIYHV 60 KSHLQKYRLA KYLPDSSSEG KKTDKKESGD VLSGLDGSSG MQITEALKLQ MEVQKRLHEQ 120 LEVQRQLQLR IEAQGKYLKK IIEEQQRLSG ALGEPSSGPV TGESDPATPA PTSESPLQDK 180 SGKECGPDKS LSVDESLSSY REPLTPDSGC NLGSQDESAG EERSSKRPRL VRGGVAGYTP 240 EMVVAHPILE SGLNASYHQS DHALGFDRPS TSLLGAENGL DKVSGDDL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	4e-23	15	72	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	4e-23	15	72	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	4e-23	15	72	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	4e-23	15	72	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
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Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00252	DAP	Transfer from AT2G01060	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY084725	0.0	AY084725.1 Arabidopsis thaliana clone 115924 mRNA, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018439742.1	0.0	PREDICTED: myb family transcription factor PHL7
Swissprot	Q9SJW0	0.0	PHL7_ARATH; Myb family transcription factor PHL7
TrEMBL	A0A398AK99	0.0	A0A398AK99_BRACM; Uncharacterized protein
TrEMBL	M4DCY1	0.0	M4DCY1_BRARP; Uncharacterized protein
STRING	Bra014348.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM8753	25	36

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G01060.1	1e-165	G2-like family protein