PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC18662_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family EIL
Protein Properties Length: 405aa    MW: 45952.7 Da    PI: 4.9423
Description EIL family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC18662_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1EIN3145.85.9e-45351541123
                  XXXXXXXXXXXXXXXXXXXXXXX..XXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
         EIN3   1 eelkkrmwkdqmllkrlkerkkqlledkeaatgakksnksneqarrkkmsraQDgiLkYMlkemevcnaqGfvYgiipekgkpvegasdsLraWWkek 98 
                  eel+k+ wkd+++lk+lke++k+ l   +    + + ++  + ++++ m +aQDg+LkYM k me c+aqGfvYgi+ e+g++v+g+sd+Lr+WWk+k
  RrC18662_p1  35 EELEKKIWKDKQRLKKLKEMSKNGLSGTSL---KLSPDDDDDSSSKRMMYQAQDGVLKYMSKAMERCKAQGFVYGIVFENGRTVTGSSDNLREWWKDK 129
                  8**********************9966665...445678999******************************************************** PP

                  XXXXXXXXXXXXXXXXXXXXXXXXX CS
         EIN3  99 vefdrngpaaiskyqaknlilsges 123
                  v+fdrngpaai ky a+ ++l++e+
  RrC18662_p1 130 VRFDRNGPAAILKYSADGNVLGSEE 154
                  *****************99998765 PP
2EIN340.46.6e-13154270236353
                  TT--SHHHHHHHHHHTTTTT-S--XXXX....XXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX...... CS
         EIN3 236 dkmsakesfallsvlnqeekecatvsah....ssslrkqspkvtlsceqkedvegkkeskikhvqavkttagfpvvrkrkkkpsesakvsskevsrtc 329
                  +km+++e + +l+ ln+e++++ + + +    ss+ ++++++  +++ +++dveg+  s+ +h    +   +f+ v+  +k++ e+++   +  + tc
  RrC18662_p1 154 EKMTSREGALWLAALNREKAIVGESQHQpltfSSHENSGETDALFHEPEDYDVEGRGGSR-HHRGFGN---NFASVCNNNKRRFEEESLYPTA-VLTC 246
                  6*****************9999877777544333444488888899999*****999999.5554444...7999998888888888888775.6*** PP

                  XXXXXXX.XXXXXXXXXXXXXXXX CS
         EIN3 330 qssqfrgsetelifadknsisqne 353
                  ++s++++s++e++f d+  +++++
  RrC18662_p1 247 ENSACPYSQPEMGFRDRVLRENHQ 270
                  **********************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF048737.1E-4835159No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 405 aa     Download sequence    Send to blast
MYNTNMGMFS GLLSNPLPSL NATWKDPTGE EMEIEELEKK IWKDKQRLKK LKEMSKNGLS  60
GTSLKLSPDD DDDSSSKRMM YQAQDGVLKY MSKAMERCKA QGFVYGIVFE NGRTVTGSSD  120
NLREWWKDKV RFDRNGPAAI LKYSADGNVL GSEEKMTSRE GALWLAALNR EKAIVGESQH  180
QPLTFSSHEN SGETDALFHE PEDYDVEGRG GSRHHRGFGN NFASVCNNNK RRFEEESLYP  240
TAVLTCENSA CPYSQPEMGF RDRVLRENHQ LICPYKPTPL YQPTKEPFGM PSGLVDPYPD  300
YNQSYYGNEP ESLVGMQQQQ HQQQQQVQNT PDLFNQSDNL YRSDAAERGG NNDYFSGHRF  360
GMVDDSSPAT SVMNHNLNGH AQTVGMENNQ QNQEEDLSLP WISWT
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor acting as a positive regulator in the ethylene response pathway. Could bind the primary ethylene response element present in the ETHYLENE-RESPONSE-FACTOR1 promoter. {ECO:0000269|PubMed:9215635, ECO:0000269|PubMed:9851977}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009120725.11e-83PREDICTED: ETHYLENE INSENSITIVE 3-like 2 protein
SwissprotO231152e-49EIL2_ARATH; ETHYLENE INSENSITIVE 3-like 2 protein
TrEMBLA0A078F7T11e-143A0A078F7T1_BRANA; BnaA02g05250D protein
TrEMBLM4DUF31e-143M4DUF3_BRARP; Uncharacterized protein
STRINGBra020146.1-P1e-143(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2141635
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G21120.17e-48ETHYLENE-INSENSITIVE3-like 2