PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC18663_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family NAC
Protein Properties Length: 327aa    MW: 36967.5 Da    PI: 7.5771
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC18663_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM104.71.2e-32752291128
          NAM   1 lppGfrFhPtdeelvveyLkkkvegkk......lelee...vikev.diykvePwdLpk.............kvkaeekewyfFskrdkkyatgkrkn 75 
                  lp+G++F+P+d+e++  +L++kv+++k      ++  e   +++   +i++++P++Lp               v+++ +  +fF++ +k+y+tg+rk+
  RrC18663_p1  75 LPAGVKFDPSDKEIL-MHLEAKVSSDKrklhplID--EfipTLEGEnGICYTHPEKLPVvnicltyvnlvqvGVSKDGQVRHFFHRPSKAYTTGTRKR 169
                  799***********9.89*****999956644322..22222333336**********55899999988755444455567***************** PP

          NAM  76 ratk......sgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                  r+++      + +W++tgk+++vls ++ + g kk+Lv+y   gr++k+ekt+Wvmh+y+l
  RrC18663_p1 170 RKVStdeeghETRWHKTGKTRPVLS-QSGEAGFKKILVLYtnYGRQKKPEKTNWVMHQYHL 229
                  *733345444788************.8889**********6658***************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.54E-3368248IPR003441NAC domain
PROSITE profilePS5100530.18375248IPR003441NAC domain
PfamPF023652.3E-1476229IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
MSWCDGSDEN YDLNLERASN TDHPSIQLKD QSQSCVTSRP DSKTIVESPI MTCSSCGHKM  60
HQQDDQVIIK DLPSLPAGVK FDPSDKEILM HLEAKVSSDK RKLHPLIDEF IPTLEGENGI  120
CYTHPEKLPV VNICLTYVNL VQVGVSKDGQ VRHFFHRPSK AYTTGTRKRR KVSTDEEGHE  180
TRWHKTGKTR PVLSQSGEAG FKKILVLYTN YGRQKKPEKT NWVMHQYHLG HSEDEKDGEP  240
VLSKVFYQTQ PRQCGGSTET KPKNLVNLNR FSYENLQAGF GYEHGGKSEE ATQVIRELVV  300
REGDGSCSFL SFTCDASKGK ESFMKNQ
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that plays a regulatory role in the development of secondary cell wall fibers. Is a direct target of SND1. {ECO:0000269|PubMed:18952777}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00165DAPTransfer from AT1G28470Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0101550.0AC010155.3 Genomic sequence for Arabidopsis thaliana BAC F3M18 from chromosome I, complete sequence.
GenBankCP0026840.0CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018458762.10.0PREDICTED: NAC domain-containing protein 10
SwissprotF4HY610.0NAC10_ARATH; NAC domain-containing protein 10
TrEMBLA0A3P5Y2X70.0A0A3P5Y2X7_BRACM; Uncharacterized protein
STRINGBra032910.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20122881
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28470.10.0NAC domain containing protein 10