PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC18696_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family C3H
Protein Properties Length: 190aa    MW: 20487.8 Da    PI: 7.1373
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC18696_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH192.5e-063356326
                 S---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH  3 telCrffartGtCkyGdrCkFaHg 26
                  + C+ ++    C+yG++C+F+H+
  RrC18696_p1 33 GRHCKKYYTEEGCPYGESCTFMHD 56
                 5669*****9*************7 PP
2zf-CCCH43.93.9e-1499124126
                  --S---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                  +kt++C+ +  tG+C++G++C+FaHg
  RrC18696_p1  99 WKTRICNKWEITGYCPFGAKCHFAHG 124
                  8************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.102.7E-82957IPR000571Zinc finger, CCCH-type
SMARTSM003560.663057IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.0093058IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.14E-73057IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.7E-1892128IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.27E-1094129IPR000571Zinc finger, CCCH-type
SMARTSM003567.2E-998125IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.17898126IPR000571Zinc finger, CCCH-type
PfamPF006422.4E-1199124IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 190 aa     Download sequence    Send to blast
EIVAAHEEEG SPSREEFQIP STGEESGRSS FKGRHCKKYY TEEGCPYGES CTFMHDEASR  60
NRESVAISLG PGGGYGGGGG GNSNVVVLGG IQIVKPSNWK TRICNKWEIT GYCPFGAKCH  120
FAHGAAELHR FGGGLVEGEG KDGVSPNQDF PIIQTLVTTA ESRCNELLVR LRRSLGSEHI  180
RNGKDRGKSV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1892552e-37AC189255.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB019O20, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018485969.14e-79PREDICTED: zinc finger CCCH domain-containing protein 12-like
SwissprotQ9LQM33e-67C3H12_ARATH; Zinc finger CCCH domain-containing protein 12
TrEMBLA0A397ZAS64e-77A0A397ZAS6_BRACM; Uncharacterized protein
STRINGBra010155.1-P3e-77(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40032758
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32360.12e-55C3H family protein