PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC18700_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ERF
Protein Properties Length: 156aa    MW: 17571.1 Da    PI: 9.4853
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC18700_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP244.44e-1485131151
          AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaark 51 
                  +++kGVr ++ +g+W AeI+dp     +   r +lg+f tae Aa+ ++ a+ 
  RrC18700_p1  85 KKHKGVRKRP-SGKWSAEIWDP-----SakVRRWLGTFPTAEIAAQTYDDAAA 131
                  589*******.7*********9.....445999****************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.74E-2285130No hitNo description
Gene3DG3DSA:3.30.730.102.2E-1986133IPR001471AP2/ERF domain
PfamPF008475.7E-786130IPR001471AP2/ERF domain
SuperFamilySSF541714.51E-1486135IPR016177DNA-binding domain
SMARTSM003802.0E-1986146IPR001471AP2/ERF domain
PROSITE profilePS5103218.00486144IPR001471AP2/ERF domain
PRINTSPR003672.8E-68798IPR001471AP2/ERF domain
PRINTSPR003672.8E-6109125IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 156 aa     Download sequence    Send to blast
MDYSRINPIY DQKPLYMTRD EEHVTMVSAL RQVISNVGSD VASSSSNWNA CEALQTLDAG  60
PCPLCCITGC YGCVFPRDRE VKKEKKHKGV RKRPSGKWSA EIWDPSAKVR RWLGTFPTAE  120
IAAQTYDDAA AVLVERIGTK KKIAQKTERK HTPKQQ
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018450170.12e-90PREDICTED: putative ethylene-responsive transcription factor ERF121
SwissprotQ9FGC97e-53EF121_ARATH; Putative ethylene-responsive transcription factor ERF121
TrEMBLA0A3N6Q1H12e-64A0A3N6Q1H1_BRACR; Uncharacterized protein
STRINGBo8g051400.15e-65(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM34721562
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67010.13e-37ERF family protein