PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC18738_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family CPP
Protein Properties Length: 506aa    MW: 56016.1 Da    PI: 5.1145
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC18738_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR47.53.7e-15435472239
          TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 
                  +++gCnCkks ClkkYCeC+  g+ Cs +C+C +CkN 
  RrC18738_p1 435 HMRGCNCKKSGCLKKYCECYLMGVGCSASCRCIGCKNV 472
                  889**********************************5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5163419.802355474IPR005172CRC domain
SMARTSM011141.7E-14434475IPR033467Tesmin/TSO1-like CXC domain
PfamPF036381.4E-12437471IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 506 aa     Download sequence    Send to blast
DSPVFQYING LSPIEPLKAE HAADHVFHSL ALASPSSSLF SSPQIEESYR DSRFLIKRHH  60
HSLDLSTPIC LIGQTVKNTP DVLKRCQVKL AIELANSLRN GEDDQMVSSD DEVVVPMDAE  120
NEIARNQSDE LCRQANELDA DSDIEMETKN GSSEQEIPKA EDLRINSFTS APQQFSICSG  180
NVVERCSVQV AGGAPDITLS SSRNNSVIDS TAKAEDKEES GLQLSRKQRS VRRRCLTFDV  240
GGSYKRAPLR DSTNDLPLDF TPINETPSSQ KCVDSSKQET VPIPRTMGLH LNALVNPSAS  300
SDRKKLTSKD GCALSHAEEE FTTPVSTTRA LVSCDIKIME EASERSMEEE WVEELGSFFK  360
CQRPCFPLFL QVTFISPDIL CFICYRPIHE DAVIKSRRNV EARNPLAFAP KVVLTSDSAT  420
YLGEESNKTP ASARHMRGCN CKKSGCLKKY CECYLMGVGC SASCRCIGCK NVICQTVTQM  480
QFHFPCAVEP DAVTINEESK DHCDYI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A1e-1338947249121Protein lin-54 homolog
5fd3_B1e-1338947249121Protein lin-54 homolog
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPlays a role in development of both male and female reproductive tissues. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1893295e-80AC189329.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB037C07, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018489460.10.0PREDICTED: protein tesmin/TSO1-like CXC 4
SwissprotQ84JZ81e-165TCX4_ARATH; Protein tesmin/TSO1-like CXC 4
TrEMBLA0A3N6RIE60.0A0A3N6RIE6_BRACR; Uncharacterized protein
STRINGBra001128.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM148401620
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04850.11e-156Tesmin/TSO1-like CXC domain-containing protein