PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC18791_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family C3H
Protein Properties Length: 258aa    MW: 29107.6 Da    PI: 8.3204
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC18791_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH47.62.7e-15180204226
                  -S---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                  ktelC+ +++tGtC+yGd C+FaHg
  RrC18791_p1 180 KTELCNKWQETGTCPYGDHCQFAHG 204
                  9***********************8 PP
2zf-CCCH21.63.8e-07217242126
                  --S---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                  ykte Cr  +++ +C+yG rC+F H+
  RrC18791_p1 217 YKTEVCRMVLAGDICPYGHRCHFRHS 242
                  9**********55**********998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.101.5E-18173211IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.01E-11175210IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.23178206IPR000571Zinc finger, CCCH-type
SMARTSM003563.9E-9178205IPR000571Zinc finger, CCCH-type
PfamPF006422.5E-12180204IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.0E-12212245IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.14E-9212247IPR000571Zinc finger, CCCH-type
SMARTSM003561.8E-5216243IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.272216244IPR000571Zinc finger, CCCH-type
PfamPF006422.7E-4217242IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
MQQRRQDMVN REALCYTRLH EATLEAEALR AENTELRSLN LLLKKEIDQL IRSSLRSRYN  60
RAPLRTLGGN NENQSPPAAA AAGDRNRRDD DDVGDESPTN EDVNRSSLPK SISVRSSGYS  120
KANQGGGGFV VQSRAAIPKP GTCAQQRFTT TRKVYVRGGK KEEDEEEEIE VEVYNQGMTK  180
TELCNKWQET GTCPYGDHCQ FAHGIKELRP VIRHPRYKTE VCRMVLAGDI CPYGHRCHFR  240
HSLSDQEKLM AAACKPNN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1rgo_A7e-22180242567Butyrate response factor 2
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1894891e-119AC189489.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB084K02, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018444398.11e-160PREDICTED: zinc finger CCCH domain-containing protein 15-like
SwissprotQ9C9F51e-117C3H15_ARATH; Zinc finger CCCH domain-containing protein 15
TrEMBLA0A397YQ201e-127A0A397YQ20_BRACM; Uncharacterized protein
STRINGBra004288.1-P1e-126(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM72872339
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68200.11e-97C3H family protein