PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC1879_p4
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family B3
Protein Properties Length: 254aa    MW: 29143.9 Da    PI: 6.4051
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC1879_p4genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B334.53.7e-11181001299
                 HTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
          B3  12 ksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                 ++++ ++p + +++ g+    +  ++++ ++++sW++ l  +k +++ ++ ++ W eFv++n L + D+++F++++++ f   v++f+k
  RrC1879_p4  18 SKSMRIIPEELVRSSGEA--FEHRVVFNVRWNNSWQLWL--QKEKNGlFMVEEDWDEFVDDNLLGTDDILLFTHQDTMYF--EVRIFKK 100
                 445678999999999744..6668***************..88888889************************9887888..8888876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.94E-142101IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.7E-143102IPR015300DNA-binding pseudobarrel domain
CDDcd100171.91E-10499No hitNo description
SMARTSM010192.7E-146101IPR003340B3 DNA binding domain
PROSITE profilePS5086311.0117101IPR003340B3 DNA binding domain
PfamPF023624.6E-918100IPR003340B3 DNA binding domain
SuperFamilySSF1019362.55E-8153238IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.1E-6154241IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.064160250IPR003340B3 DNA binding domain
PROSITE profilePS508636.414217254IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MSNPSFTKSL SLGQNWKSKS MRIIPEELVR SSGEAFEHRV VFNVRWNNSW QLWLQKEKNG  60
LFMVEEDWDE FVDDNLLGTD DILLFTHQDT MYFEVRIFKK DGKEITSVPL EVEPETQPFH  120
QETTPASASA SGGTSSRARK GFAHVKNPKR YLLNPRNPYF EKTLTKSNKV LYMTTWVIEE  180
YELEFSPPNT HIYFLLPDGG KLDGYTKNYG GSHGFLGWAA VCERYNLKTG DTVVCELELS  240
GRVVSAVRVH FVNA
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00528DAPTransfer from AT5G25475Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018434393.10.0PREDICTED: B3 domain-containing protein At5g25470-like
SwissprotQ680D91e-104Y5475_ARATH; B3 domain-containing protein At5g25475
TrEMBLA0A3P5ZG111e-164A0A3P5ZG11_BRACM; Uncharacterized protein
STRINGBra021284.1-P1e-163(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM44911645
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25475.31e-97B3 family protein