PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC1885_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family NAC
Protein Properties Length: 511aa    MW: 57564.8 Da    PI: 6.5967
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC1885_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM171.42.7e-53121382127
         NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk...kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkg 97 
                 ppGfrFhPtdeelv +yLkkkv++++++l +vi+e+d+yk+ePwdL++     ++e+kewyfFs++dkky+tg+r+nrat +g+Wkatg+dk+v+  ++
  RrC1885_p1  12 PPGFRFHPTDEELVGYYLKKKVASQSIDL-DVIREIDLYKIEPWDLQErcrIGYEEQKEWYFFSHKDKKYPTGTRTNRATMAGFWKATGRDKAVYL-NS 108
                 9****************************.9***************953432234677**************************************.99 PP

         NAM  98 elvglkktLvfykgrapkgektdWvmheyr 127
                 +l+g++ktLvfy+grap+g+k+dW++hey 
  RrC1885_p1 109 KLIGMRKTLVFYRGRAPNGQKSDWIIHEYY 138
                 9***************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.75E-587161IPR003441NAC domain
PROSITE profilePS5100557.49611161IPR003441NAC domain
PfamPF023653.0E-2612137IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048759Biological Processxylem vessel member cell differentiation
GO:1901348Biological Processpositive regulation of secondary cell wall biogenesis
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 511 aa     Download sequence    Send to blast
MMGPVDQESS IPPGFRFHPT DEELVGYYLK KKVASQSIDL DVIREIDLYK IEPWDLQERC  60
RIGYEEQKEW YFFSHKDKKY PTGTRTNRAT MAGFWKATGR DKAVYLNSKL IGMRKTLVFY  120
RGRAPNGQKS DWIIHEYYSL ESHQNAPPQE EGWVVCRAFK KRTTTVPTKK RQLWDPNCFL  180
YDDAALLEPL DKNVLIKRAN HNTDGLAVTP FKQELPFEAN QIVDDGLFGS MYLKSMGDDE  240
LSQLPQLESP SLGSDKLPET ISRPGEDEVG AEKRMTDWRA LDNYSLFHSL LGRTGPGAEL  300
KQTKQLDSKA RSQSSHGGEN RGGGDVITTI SQRSEKVDPI LDNLNSLSVS RPILKSAAPR  360
ESSLTDILVR KALSSSSSKD TVDPQILVEL FSIYREWQDS KAQDITTRQE DIENKIEVAD  420
ALASKLLQRF NHSVSAMRTT SHHLSQVHGL QVELGELKGR LTEVINNCDS LCKRINSEGP  480
ESLRSTVTPF VLAPPPDSVS SSTTLSSKQE P
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-481016516169NO APICAL MERISTEM PROTEIN
1ut4_B1e-481016516169NO APICAL MERISTEM PROTEIN
1ut7_A1e-481016516169NO APICAL MERISTEM PROTEIN
1ut7_B1e-481016516169NO APICAL MERISTEM PROTEIN
3swm_A1e-481016519172NAC domain-containing protein 19
3swm_B1e-481016519172NAC domain-containing protein 19
3swm_C1e-481016519172NAC domain-containing protein 19
3swm_D1e-481016519172NAC domain-containing protein 19
3swp_A1e-481016519172NAC domain-containing protein 19
3swp_B1e-481016519172NAC domain-containing protein 19
3swp_C1e-481016519172NAC domain-containing protein 19
3swp_D1e-481016519172NAC domain-containing protein 19
4dul_A1e-481016516169NAC domain-containing protein 19
4dul_B1e-481016516169NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:25148240). {ECO:0000250|UniProtKB:Q9LVA1, ECO:0000269|PubMed:25148240}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00590DAPTransfer from AT5G66300Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF7382780.0KF738278.1 Brassica napus NAC transcription factor 105 (NAC105.1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018437582.10.0PREDICTED: NAC domain-containing protein 105
SwissprotQ9FH591e-158NC105_ARATH; NAC domain-containing protein 105
TrEMBLA0A0D3D8I40.0A0A0D3D8I4_BRAOL; Uncharacterized protein
STRINGBo7g065010.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM151341619
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66300.11e-140NAC domain containing protein 105
Publications ? help Back to Top
  1. Tan TT, et al.
    Transcription Factors VND1-VND3 Contribute to Cotyledon Xylem Vessel Formation.
    Plant Physiol., 2018. 176(1): p. 773-789
    [PMID:29133368]