PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RrC1889_p3

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

bZIP

Protein Properties

Length: 455aa MW: 50534.7 Da PI: 7.2096

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC1889_p3	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	33.3	1.1e-10	157	185	5	33
CHHHCHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLee 33 k rr+++NReAAr+sR+RKka++++Le RrC1889_p3 157 KTLRRLAQNREAARKSRLRKKAYVQQLES 185 7789***********************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	3.7E-9	148	201	No hit	No description
SMART	SM00338	8.9E-6	153	254	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	8.737	155	199	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	9.5E-8	157	187	IPR004827	Basic-leucine zipper domain
CDD	cd14708	2.15E-22	157	209	No hit	No description
SuperFamily	SSF57959	2.01E-7	157	198	No hit	No description
PROSITE pattern	PS00036	0	160	175	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	6.5E-30	249	323	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 455 aa Download sequence Send to blast
MQGHHQNHHQ QLSSASATSS NGNFMNKDGY DLGEIDPSLF LYLDGQGHHD PPSTAPLSHH 60 HTTQNLVMRP PTSTLNIFPS QPMHIEPPPS SNSTPNTDNT RLVAPSSSTR PSSEPSMDLT 120 NHSQFQLPQP SKSIKKEGNR KGPASSDHDI PKSSDPKTLR RLAQNREAAR KSRLRKKAYV 180 QQLESCRIKL TQLEQEIQRA RSQGVFFGGS LVGGDQQQGG LSIGPGNTSS AAVFDMEYTR 240 WLEEQQRLLA ELRVATQENL AENELRMFVD TCLAHYDHLI NLKAMVAKTD VFHLISGAWK 300 TPAERCFLWL GGFRPSEIIK VIVNQIEQLT EQQIVGICGL QQSTQEAEEA LSQGLDALNQ 360 SLSDSIVSDS LSPASAQFPP HLSNFMSHMS LALNKLSALE GFVLQADNLR HQTVHRLNQL 420 LTTRQEARCI LAAAEYFHRL QALSSLWLAR PRQDG

Sequence ? help Back to Top

Protein Sequence Length: 455 aa Download sequence Send to blast

MQGHHQNHHQ QLSSASATSS NGNFMNKDGY DLGEIDPSLF LYLDGQGHHD PPSTAPLSHH  60
HTTQNLVMRP PTSTLNIFPS QPMHIEPPPS SNSTPNTDNT RLVAPSSSTR PSSEPSMDLT  120
NHSQFQLPQP SKSIKKEGNR KGPASSDHDI PKSSDPKTLR RLAQNREAAR KSRLRKKAYV  180
QQLESCRIKL TQLEQEIQRA RSQGVFFGGS LVGGDQQQGG LSIGPGNTSS AAVFDMEYTR  240
WLEEQQRLLA ELRVATQENL AENELRMFVD TCLAHYDHLI NLKAMVAKTD VFHLISGAWK  300
TPAERCFLWL GGFRPSEIIK VIVNQIEQLT EQQIVGICGL QQSTQEAEEA LSQGLDALNQ  360
SLSDSIVSDS LSPASAQFPP HLSNFMSHMS LALNKLSALE GFVLQADNLR HQTVHRLNQL  420
LTTRQEARCI LAAAEYFHRL QALSSLWLAR PRQDG

Functional Description ? help Back to Top
Source	Description
UniProt	Together with TGA9, basic leucine-zipper transcription factor required for anther development, probably via the activation of SPL expression in anthers and via the regulation of genes with functions in early and middle tapetal development (PubMed:20805327). Required for signaling responses to pathogen-associated molecular patterns (PAMPs) such as flg22 that involves chloroplastic reactive oxygen species (ROS) production and subsequent expression of H(2)O(2)-responsive genes (PubMed:27717447). {ECO:0000269\|PubMed:20805327, ECO:0000269\|PubMed:27717447}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00491	DAP	Transfer from AT5G06839	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Strongly induced by flg22 in leaves. {ECO:0000269\|PubMed:27717447}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HQ132742	0.0	HQ132742.1 Arabidopsis thaliana bZIP65 (At5g06839) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018472625.1	0.0	PREDICTED: transcription factor TGA2.2-like isoform X1
Swissprot	E3VNM4	0.0	TGA10_ARATH; Transcription factor TGA10
TrEMBL	A0A3P5ZE78	0.0	A0A3P5ZE78_BRACM; Uncharacterized protein
STRING	Bo3g004060.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM7207	28	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06839.3	0.0	bZIP family protein

Publications ? help Back to Top
Noshi M,Mori D,Tanabe N,Maruta T,Shigeoka S Arabidopsis clade IV TGA transcription factors, TGA10 and TGA9, are involved in ROS-mediated responses to bacterial PAMP flg22. Plant Sci., 2016. 252: p. 12-21 [PMID:27717447] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]