PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RrC18955_p1

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

SRS

Protein Properties

Length: 229aa MW: 24363.8 Da PI: 8.793

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC18955_p1	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	116.4	3.9e-36	131	225	4	96
DUF702 4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa.aeaaskrkrelks.kkqsalsstklssaes 96 g+asCqdCGnqakkdCah RCRtCCksrgfdC thv+st vpaakrrerq+ql++ + ++ + + ++ +kr+re+ +++sal +t+++++++ RrC18955_p1 131 GGASCQDCGNQAKKDCAHVRCRTCCKSRGFDCPTHVRSTLVPAAKRRERQHQLSTVQPQTHQPRgDSGVPKRQRENLPaATSSALVCTRIPTHNA 225 789*************************************************9999877777665777889999886515667889999998875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	4.2E-32	132	212	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	1.4E-25	134	176	IPR006510	Zinc finger, lateral root primordium type 1

Sequence ? help Back to Top
Protein Sequence Length: 229 aa Download sequence Send to blast
MAGFFSLDGG GRGGGGGNSQ EEHHTNTNTN PPPPVSEAWL WYRNPNVNAN APSSTNAAAL 60 GTLELWQNHS QQEIMFQHQQ HQQRLDLYSS AAGLGVGPSN HSQFDISGEN SNAAAGRAAA 120 LMMMRSGGSG GGASCQDCGN QAKKDCAHVR CRTCCKSRGF DCPTHVRSTL VPAAKRRERQ 180 HQLSTVQPQT HQPRGDSGVP KRQRENLPAA TSSALVCTRI PTHNASGIS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	9	16	GGRGGGGG

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269\|PubMed:12361963, ECO:0000269\|PubMed:16740145, ECO:0000269\|PubMed:16740146, ECO:0000269\|PubMed:18811619, ECO:0000269\|PubMed:20154152, ECO:0000269\|PubMed:22318676}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Regulated by ESR1 and ESR2. {ECO:0000269\|PubMed:21976484}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	GU205262	0.0	GU205262.1 Brassica rapa subsp. pekinensis stylish (STY1-1) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018468627.1	1e-166	PREDICTED: protein SHI RELATED SEQUENCE 1
Swissprot	Q9SD40	1e-100	SRS1_ARATH; Protein SHI RELATED SEQUENCE 1
TrEMBL	A0A0D3A8F7	1e-128	A0A0D3A8F7_BRAOL; Uncharacterized protein
TrEMBL	A0A3P6EZB1	1e-128	A0A3P6EZB1_BRAOL; Uncharacterized protein
STRING	Bo1g060520.1	1e-129	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3419	28	64

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G51060.1	6e-71	Lateral root primordium (LRP) protein-related

Publications ? help Back to Top
Estornell LH,Landberg K,Cierlik I,Sundberg E SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis. Front Plant Sci, 2018. 9: p. 150 [PMID:29491878]