PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC18963_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family EIL
Protein Properties Length: 277aa    MW: 31721.7 Da    PI: 4.3635
Description EIL family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC18963_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1EIN3148.31e-45281301108
                  XXXXXXXXXXXXXXXXXXXXXXX..XXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
         EIN3   1 eelkkrmwkdqmllkrlkerkkqlledkeaatgakksnksneqarrkkmsraQDgiLkYMlkemevcnaqGfvYgiipekgkpvegasdsLraWWkek 98 
                  ++lk+rmwkdq+l+++lk++k++++   ++ ++   s ++ e++rrkkm+r+QD++LkYM+k+mevc+a+GfvYgi+pekgkp +g+sdsLr+WWke+
  RrC18963_p1  28 DDLKRRMWKDQNLMEKLKQQKRDNV--TDV-IS--LSTHRAEASRRKKMARSQDSVLKYMMKIMEVCKAKGFVYGIVPEKGKPITGSSDSLRRWWKEN 120
                  79*********************88..444.33..45699********************************************************** PP

                  XXXXXXXXXX CS
         EIN3  99 vefdrngpaa 108
                  v+fd+n+p a
  RrC18963_p1 121 VQFDQNAPSA 130
                  *******986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF048733.4E-4728147No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
MVEVEELEPL SPVEDADEGE EEEEISYDDL KRRMWKDQNL MEKLKQQKRD NVTDVISLST  60
HRAEASRRKK MARSQDSVLK YMMKIMEVCK AKGFVYGIVP EKGKPITGSS DSLRRWWKEN  120
VQFDQNAPSA SVYTCQNSSC PQSDASFGFM DKNSRTGHEI QCLYGSSSQS TGDTRSVLET  180
APSIGTNTTS EDDYSASSSS AVGKRDDDDH SNWLDYLWFE RMQHEFNCSK RFEDDDGTAV  240
DLNQLLESDQ SSHNVNQNNF SVWDMGCEDK DIYMFDY
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor that may be involved in the ethylene response pathway. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2400890.0AC240089.1 Brassica oleracea clone BOT01-64A15, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022553100.11e-113putative ETHYLENE INSENSITIVE 3-like 4 protein
SwissprotQ9LX161e-69EIL4_ARATH; Putative ETHYLENE INSENSITIVE 3-like 4 protein
TrEMBLA0A3N6QTY91e-160A0A3N6QTY9_BRACR; Uncharacterized protein
STRINGBo2g009710.14e-89(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16143412
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10120.11e-67EIL family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Jeong HJ,Choi JY,Shin HY,Bae JM,Shin JS
    Seed-specific expression of seven Arabidopsis promoters.
    Gene, 2014. 553(1): p. 17-23
    [PMID:25261846]