PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC18985_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family C3H
Protein Properties Length: 295aa    MW: 33593 Da    PI: 7.6434
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC18985_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH222.8e-07154176427
                  ---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                  ++C++f + G+Ck+Gd+C++ Hg+
  RrC18985_p1 154 KICHYFNK-GYCKHGDNCRYFHGQ 176
                  68******.*************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.0045150176IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.263150177IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.83E-6152175IPR000571Zinc finger, CCCH-type
PfamPF006423.7E-5154176IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.5E-6154176IPR000571Zinc finger, CCCH-type
PfamPF128721.9E-12204275IPR025605OST-HTH/LOTUS domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MNVVHSRIQH LEPENASKII GYLLMQDHGD LDMIRLAFCP DSVMHSMINF VKYELAKDPR  60
YNSPPSDHVP TLSFGSFTGS SIQPPSVSVS PPLRTGYWEN STEIDSLHNN VQFLNVEDSM  120
TSPEFSNGFF SRDHQCFPLR TSRRSPSLPE FPVKICHYFN KGYCKHGDNC RYFHGQIIPE  180
REGFSQMFNP NNLSDEEHVV SPGSLEKLEG EIIELLKSRR GAPISIASLP MMYYEKYSRT  240
LQAEGYLTES QRHGKAGFSL TKLLARLNNT IRLIDSKCNL NFQASRPAFG HISRR
Functional Description ? help Back to Top
Source Description
UniProtPossesses ribonuclease activity in vitro. {ECO:0000269|PubMed:18582464}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009102362.10.0PREDICTED: zinc finger CCCH domain-containing protein 18-like
SwissprotQ9SJ411e-156C3H18_ARATH; Zinc finger CCCH domain-containing protein 18
TrEMBLA0A3P6BIK30.0A0A3P6BIK3_BRACM; Uncharacterized protein
TrEMBLM4DF910.0M4DF91_BRARP; Uncharacterized protein
STRINGBra015163.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM368522
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]