PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC18987_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family EIL
Protein Properties Length: 586aa    MW: 66449 Da    PI: 6.0121
Description EIL family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC18987_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1EIN3505.82.1e-154484351354
                  XXXXXXXXXXXXXXXXXXXXXXX..XXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
         EIN3   1 eelkkrmwkdqmllkrlkerkkqlledkeaatgakksnksneqarrkkmsraQDgiLkYMlkemevcnaqGfvYgiipekgkpvegasdsLraWWkek 98 
                  +el++r w+d+m+lkrlke++++++  ke  ++a+k+++s+eqarrkkmsraQDgiLkYMlk+mevc+aqGfvYgiipekgkpv+gasd+Lr+WWk+k
  RrC18987_p1  48 DELERRVWRDKMRLKRLKEQQQSRC--KEG-VDASKQRQSQEQARRKKMSRAQDGILKYMLKMMEVCKAQGFVYGIIPEKGKPVTGASDNLREWWKDK 142
                  79*********************99..888.9****************************************************************** PP

                  XXXXXXXXXXXXXX.XXXXXXXXXXXXX.....XX----STTS-HHHHHHHHHHHSSSSSS-TTS--TTT--HHHH---S--HHHHHHT--TT--..- CS
         EIN3  99 vefdrngpaaisky.qaknlilsgessl.qtersseshslselqDTtlgSLLsalmqhcdppqrrfplekgvepPWWPtGkelwwgelglskdqg.tp 193
                  v+fdrngpaai+ky + +n+i++g+s++ ++    ++h+l+elqDTtlgSLLsalmqhcdppqrrfplekgv+pPWWP+G+e+ww++lgl++dq  +p
  RrC18987_p1 143 VRFDRNGPAAIAKYgAENNNIAGGGSNDcNSLVGPTPHTLQELQDTTLGSLLSALMQHCDPPQRRFPLEKGVPPPWWPNGREDWWPQLGLPNDQApPP 240
                  **************966666776666655999***************************************************************9** PP

                  ----GGG--HHHHHHHHHHHHHHTGGGHHHHHHTTTTSSSSTTT--SHHHHHHHHHHTTTTT-S--XXXX..XX..XXXXXXXXXXXXXXXXXXXX.. CS
         EIN3 194 pykkphdlkkawkvsvLtavikhmsptieeirelerqskylqdkmsakesfallsvlnqeekecatvsah..ss..slrkqspkvtlsceqkedve.. 285
                  pykkphdlkkawkv+vLtavikhmsp+i++ir+l+rqsk+lqdkm+akes+++l+++nqee  ++++++   ++  s++ +s ++ +++ +++dve  
  RrC18987_p1 241 PYKKPHDLKKAWKVGVLTAVIKHMSPDIAKIRKLVRQSKCLQDKMTAKESATWLAIINQEEVVAQELYPGscPPlsSSSLGSGSLLIDDCSEYDVEcf 338
                  *********************************************************************96522645555****************98 PP

                  XXXXXX.XXXXXXXXXX.............................XXXXXXXXXXXXXXXXXXXXX......XXXXXXX.XXXXXXXXXXXXXXXXX CS
         EIN3 286 gkkeskikhvqavktta.............................gfpvvrkrkkkpsesakvsskevsrtcqssqfrgsetelifadknsisqney 354
                  +k++++  +v++ k +                              +++++rkrk++++ +  ++++    tc++ q+++s+ +l+f+d++s++++++
  RrC18987_p1 339 EKEHQQGFDVEELKPEIvvsmnhptsfgicrmqqfpvkeevvatvgNLDFARKRKQNNDLNVLMMER-PGFTCENGQCPHSKINLGFQDRSSRDNHQM 435
                  7777777899999987799************************************888877777766.67**************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF048739.9E-12948301No hitNo description
Gene3DG3DSA:1.10.3180.101.1E-73175310IPR023278Ethylene insensitive 3-like protein, DNA-binding domain
SuperFamilySSF1167685.36E-61179303IPR023278Ethylene insensitive 3-like protein, DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009723Biological Processresponse to ethylene
GO:0042742Biological Processdefense response to bacterium
GO:0071281Biological Processcellular response to iron ion
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 586 aa     Download sequence    Send to blast
MMMFNEMGMY GSMDFLSSTS HAETDVCPFP QDHPVVEDDY TDDEVDVDEL ERRVWRDKMR  60
LKRLKEQQQS RCKEGVDASK QRQSQEQARR KKMSRAQDGI LKYMLKMMEV CKAQGFVYGI  120
IPEKGKPVTG ASDNLREWWK DKVRFDRNGP AAIAKYGAEN NNIAGGGSND CNSLVGPTPH  180
TLQELQDTTL GSLLSALMQH CDPPQRRFPL EKGVPPPWWP NGREDWWPQL GLPNDQAPPP  240
PYKKPHDLKK AWKVGVLTAV IKHMSPDIAK IRKLVRQSKC LQDKMTAKES ATWLAIINQE  300
EVVAQELYPG SCPPLSSSSL GSGSLLIDDC SEYDVECFEK EHQQGFDVEE LKPEIVVSMN  360
HPTSFGICRM QQFPVKEEVV ATVGNLDFAR KRKQNNDLNV LMMERPGFTC ENGQCPHSKI  420
NLGFQDRSSR DNHQMVCPYR DNRLAYGAAP KFHTSEVKAV VVSQQSQPYP QPVQPTDLSG  480
YGVPKNGQKM ITELMAMYDR NVQSSQASNQ SMIVDSTAAQ NYQEQQLSFN RNQMFMQQGN  540
SEINNQSQIV FDSTSFDVAS FDYKNDWQAG VMEGMGKQQQ DVSIWF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4zds_A2e-831783112134Protein ETHYLENE INSENSITIVE 3
4zds_B2e-831783112134Protein ETHYLENE INSENSITIVE 3
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor acting as a positive regulator in the ethylene response pathway. Could bind the primary ethylene response element present in the ETHYLENE-RESPONSE-FACTOR1 promoter. {ECO:0000269|PubMed:9215635, ECO:0000269|PubMed:9851977}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1893330.0AC189333.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB038M13, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018476804.10.0PREDICTED: ETHYLENE INSENSITIVE 3-like 1 protein
SwissprotQ9SLH00.0EIL1_ARATH; ETHYLENE INSENSITIVE 3-like 1 protein
TrEMBLA0A0D3B7E60.0A0A0D3B7E6_BRAOL; Uncharacterized protein
STRINGBo3g041690.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM21352879
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27050.10.0ETHYLENE-INSENSITIVE3-like 1
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Kim HG, et al.
    GDSL LIPASE1 modulates plant immunity through feedback regulation of ethylene signaling.
    Plant Physiol., 2013. 163(4): p. 1776-91
    [PMID:24170202]
  3. Zhang GB,Yi HY,Gong JM
    The Arabidopsis ethylene/jasmonic acid-NRT signaling module coordinates nitrate reallocation and the trade-off between growth and environmental adaptation.
    Plant Cell, 2014. 26(10): p. 3984-98
    [PMID:25326291]
  4. Wang J, et al.
    Arabidopsis ROOT HAIR DEFECTIVE3 is involved in nitrogen starvation-induced anthocyanin accumulation.
    J Integr Plant Biol, 2015. 57(8): p. 708-21
    [PMID:25494721]
  5. Qing D, et al.
    Quantitative and Functional Phosphoproteomic Analysis Reveals that Ethylene Regulates Water Transport via the C-Terminal Phosphorylation of Aquaporin PIP2;1 in Arabidopsis.
    Mol Plant, 2016. 9(1): p. 158-174
    [PMID:26476206]
  6. Poulios S,Vlachonasios KE
    Synergistic action of histone acetyltransferase GCN5 and receptor CLAVATA1 negatively affects ethylene responses in Arabidopsis thaliana.
    J. Exp. Bot., 2016. 67(3): p. 905-18
    [PMID:26596766]
  7. Shen X,Li Y,Pan Y,Zhong S
    Activation of HLS1 by Mechanical Stress via Ethylene-Stabilized EIN3 Is Crucial for Seedling Soil Emergence.
    Front Plant Sci, 2016. 7: p. 1571
    [PMID:27822221]
  8. Abozeid A, et al.
    Ethylene Improves Root System Development under Cadmium Stress by Modulating Superoxide Anion Concentration in Arabidopsis thaliana.
    Front Plant Sci, 2017. 8: p. 253
    [PMID:28286514]
  9. Feng Y, et al.
    Ethylene promotes root hair growth through coordinated EIN3/EIL1 and RHD6/RSL1 activity in Arabidopsis.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(52): p. 13834-13839
    [PMID:29233944]
  10. Harkey AF, et al.
    Identification of Transcriptional and Receptor Networks That Control Root Responses to Ethylene.
    Plant Physiol., 2018. 176(3): p. 2095-2118
    [PMID:29259106]