PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RrC18996_p2

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

NAC

Protein Properties

Length: 178aa MW: 20347.3 Da PI: 4.5042

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC18996_p2	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	47.7	5e-15	5	134	2	127
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleev.ikevdiykvePwdLpkkvka...eekewyfFskrdkkyatgkrknratk....sgyWkatgkdke 91 p+++rF Ptdee+ e+L ++++++ le i+++ y +P+ pk+++ +++ wyf +++ k + + ++nr+++ +g Wk gk + RrC18996_p2 5 PKCVRFAPTDEEVFEEFLIPRIANDLQALEGSlIADFPFYAQDPRYAPKEIQPlflSDNYWYFVTRTPLK-PGSLKPNRVVAnqilQGKWKDVGKPQI 101 789*****************99987776656*********997665555577788777766665.6788999964446779******9 PP NAM 92 vlskkgelvglkktLvfykgrapkgektdWvmheyr 127 +++ ++ + g tL + +++ t W hey+ RrC18996_p2 102 ITRGNTLNLGKMITLDYV---NSENLMTGWRQHEYE 134 999788888888899998...344468******7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.88E-17	4	152	IPR003441	NAC domain
PROSITE profile	PS51005	22.513	4	153	IPR003441	NAC domain
Pfam	PF02365	1.6E-10	6	134	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 178 aa Download sequence Send to blast
MAAAPKCVRF APTDEEVFEE FLIPRIANDL QALEGSLIAD FPFYAQDPRY APKEIQPLFL 60 SDNYWYFVTR TPLKPGSLKP NRVVANQILQ GKWKDVGKPQ IITRGNTLNL GKMITLDYVN 120 SENLMTGWRQ HEYERIVDAP IFQTVVVVRL FYDLKLDQTA VLENVNDDLL DVDALVGE

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002865962.2	3e-37	uncharacterized protein LOC9300309 isoform X1
Refseq	XP_020869276.1	2e-37	uncharacterized protein LOC9300309 isoform X2
Refseq	XP_020869281.1	2e-37	uncharacterized protein LOC9300309 isoform X3
Refseq	XP_020869287.1	2e-37	uncharacterized protein LOC9300309 isoform X4
Refseq	XP_020869291.1	1e-37	uncharacterized protein LOC9300309 isoform X5
Refseq	XP_020869302.1	9e-38	uncharacterized protein LOC9300309 isoform X6
Refseq	XP_020869311.1	8e-38	uncharacterized protein LOC9300309 isoform X7
TrEMBL	A0A1J3JQP4	2e-45	A0A1J3JQP4_NOCCA; Uncharacterized protein (Fragment)
STRING	Bostr.26833s0491.1.p	2e-42	(Boechera stricta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM17442	7	9

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G15500.1	4e-11	NAC domain containing protein 3