PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC19079_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family NF-YA
Protein Properties Length: 317aa    MW: 35135.4 Da    PI: 10.0546
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC19079_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA104.77.8e-33161216258
    CBFB_NFYA   2 eplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                  ep++VNaKQy++I++RRq+Rakle+++kl +k+rkpylheSRh hAl+RpRgsgGrF
  RrC19079_p1 161 EPVFVNAKQYHAIMRRRQQRAKLEAQNKL-IKARKPYLHESRHVHALKRPRGSGGRF 216
                  9****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005211.8E-38158219IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115237.879159219IPR001289Nuclear transcription factor Y subunit A
PfamPF020455.7E-27161216IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006165.6E-24162184IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860164184IPR018362CCAAT-binding factor, conserved site
PRINTSPR006165.6E-24193216IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    Send to blast
MSKKGSTLPY LNTSIAWGVL PTEPLNLKTV DARPGHMHAT KQISFQDQDS PSTQSTCQSY  60
TEVASSGDDH PSRQISFSTK SGSEETQRKV SATHAKPGAM TSFPNMNFAP TQANFSFHYA  120
DPHYGGLLGT TYLPQAPTCN PQMVGMVPGR VQLPVEITET EPVFVNAKQY HAIMRRRQQR  180
AKLEAQNKLI KARKPYLHES RHVHALKRPR GSGGRFLNTK KLLQESQQAA PKQQEHDKRT  240
NMSRFQAHML HHNKDRGSTT SGSDITCVSD GAADIFGHTE LQFSGFPTTQ TNRAMLVHGQ  300
SNDMHGGGDL HHFSVHI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A6e-20161220362NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtStimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018452558.10.0PREDICTED: nuclear transcription factor Y subunit A-3-like
SwissprotQ93ZH20.0NFYA3_ARATH; Nuclear transcription factor Y subunit A-3
TrEMBLA0A0D3D0790.0A0A0D3D079_BRAOL; Uncharacterized protein
STRINGBo6g116250.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM33492762
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72830.10.0nuclear factor Y, subunit A3