PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC190_p6
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family HSF
Protein Properties Length: 130aa    MW: 15490 Da    PI: 10.8266
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC190_p6genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind55.21.9e-17121032101
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   F +++ye+++d++l+++isws++++ fv+++++e+ ++ + + F  ++++ F+   +++gF++vk++++         +F++ +F +g+ ell+k++
     RrC190_p6  12 FYSNIYEVVDDPSLDSIISWSKSNKGFVIWNPKELIERKIVTRFFCRELSQFISDVELFGFRRVKKSKH--------LKFTNANFVRGQPELLKKMQ 100
                   8999***************************999987777777778899****************9996........6*****************99 PP

                   XXX CS
  HSF_DNA-bind  99 rkk 101
                    ++
     RrC190_p6 101 SET 103
                   765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.103.3E-20697IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004152.1E-228102IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467858.5E-199100IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004471.7E-1712100IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.5E-61235IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.5E-66375IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 130 aa     Download sequence    Send to blast
MVHEYPKGLD SFYSNIYEVV DDPSLDSIIS WSKSNKGFVI WNPKELIERK IVTRFFCREL  60
SQFISDVELF GFRRVKKSKH LKFTNANFVR GQPELLKKMQ SETSFARFKK RRRAARAKAQ  120
VEERLQRLQI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018469772.11e-75PREDICTED: heat stress transcription factor A-4a-like
RefseqXP_018470204.11e-75PREDICTED: heat stress transcription factor A-4a-like
TrEMBLA0A1J3HJS98e-41A0A1J3HJS9_NOCCA; Heat shock factor protein HSF8
STRINGBra013406.1-P2e-38(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM50671450
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G19630.16e-33HSF family protein