PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC190_p7
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family HSF
Protein Properties Length: 161aa    MW: 19109.1 Da    PI: 10.2448
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC190_p7genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind61.12.9e-19495299
                  HHHHHHHHHCTGGGTTTSEESSSSSEEEES-.HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESX.XXXXXXXXXXXXX CS
  HSF_DNA-bind  2 Flkklyeiledeelkeliswsengnsfvvld.eeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhks.Fkkgkkellekik 98
                  F   +yei++d++l+++isws++++sfv+++ +e f+k++L+k+F   n++ F+  L++YgF +++ ++++        eF hk+ F +gk ell+k++
     RrC190_p7  4 FHVYVYEIVDDPSLDSIISWSKSNKSFVIWNpTELFKKRILKKFF-CCNLSQFITELDKYGFVRIEGSDEQ-------LEFGHKQyFVRGKPELLNKMR 94
                  66779*************************944567888888887.5799*******************99.......******989********9987 PP

                  X CS
  HSF_DNA-bind 99 r 99
                   
     RrC190_p7 95 L 95
                  5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004151.3E-22196IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467852.39E-20294IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.103.2E-20390IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000561.2E-5427IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004473.9E-18594IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.2E-55567IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 161 aa     Download sequence    Send to blast
MYQFHVYVYE IVDDPSLDSI ISWSKSNKSF VIWNPTELFK KRILKKFFCC NLSQFITELD  60
KYGFVRIEGS DEQLEFGHKQ YFVRGKPELL NKMRLQAAMN RMKKSAKEAK ARAEAEQNGA  120
VRDKPRIIVH ADDLRKRYRQ MFGPSTIAET PLENRFRHLR I
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018469624.11e-105PREDICTED: heat stress transcription factor A-4a-like
TrEMBLA0A0D3A4F02e-95A0A0D3A4F0_BRAOL; Uncharacterized protein
STRINGBo1g021700.14e-96(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM50671450
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G19630.12e-24HSF family protein