PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC19245_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family HD-ZIP
Protein Properties Length: 253aa    MW: 29462.8 Da    PI: 7.2206
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC19245_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.64.3e-1852104456
                  -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
     Homeobox   4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                  + +++ eq+++Le+ Fe  +++  e++ +LAk lgL+ rq+ +WFqNrRa++k
  RrC19245_p1  52 KKRLNLEQVRALEKSFELGNKLEPERKMQLAKALGLQPRQIAIWFQNRRARWK 104
                  4568889*********************************************9 PP
2HD-ZIP_I/II1292e-4150140191
  HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                  ekk+rl+ eqv++LE+sFe  +kLeperK++la++Lglqprq+a+WFqnrRAR+ktkqlE+dy++Lk+++d lk++n++L +++++L++e+
  RrC19245_p1  50 EKKKRLNLEQVRALEKSFELGNKLEPERKMQLAKALGLQPRQIAIWFQNRRARWKTKQLERDYDSLKKQFDVLKSDNDSLLAHNKKLHAEV 140
                  69*************************************************************************************9886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.8E-1939108IPR009057Homeodomain-like
SMARTSM003892.6E-1749110IPR001356Homeobox domain
PROSITE profilePS5007116.55250106IPR001356Homeobox domain
CDDcd000861.49E-1551107No hitNo description
PfamPF000462.3E-1552104IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.8E-1954114IPR009057Homeodomain-like
PRINTSPR000318.3E-67786IPR000047Helix-turn-helix motif
PROSITE patternPS00027081104IPR017970Homeobox, conserved site
PRINTSPR000318.3E-686102IPR000047Helix-turn-helix motif
PfamPF021831.2E-14106140IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    Send to blast
MMNRSMSFTG VSDHHHLTQK SPTMTNMNDQ DQLGEEDNLS DDGSHMMLGE KKKRLNLEQV  60
RALEKSFELG NKLEPERKMQ LAKALGLQPR QIAIWFQNRR ARWKTKQLER DYDSLKKQFD  120
VLKSDNDSLL AHNKKLHAEV LYIHTQLLVA LKKQDRKEPS KIKRELAEAS WSNNEDTENN  180
NNSDTNHVNM IKDLFPSSVR SATTTTTSSH IDHQMVQDQG FCNMFNGIDE TTSASYWTWP  240
DQQQQHQSHH QFN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
198106RRARWKTKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1892320.0AC189232.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB013N08, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018458219.11e-157PREDICTED: homeobox-leucine zipper protein HAT7
SwissprotQ004661e-147HAT7_ARATH; Homeobox-leucine zipper protein HAT7
TrEMBLA0A1J3HJP71e-149A0A1J3HJP7_NOCCA; Homeobox-leucine zipper protein HAT7
STRINGXP_006400032.11e-149(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30952666
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15150.11e-135homeobox 3