PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RrC19496_p1

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

bHLH

Protein Properties

Length: 87aa MW: 9869.39 Da PI: 8.784

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC19496_p1	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	34.4	3.9e-11	38	83	6	55
HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 +++Er RR ri ++ +L+el+P+ + s ae+L +A e+Ik Lq RrC19496_p1 38 SIAERDRRTRISGKLKKLQELVPNiD-----NQTSYAEMLDLAAEHIKGLQ 83 689*******************55.....789**************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	13.491	32	82	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	2.75E-13	35	86	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	3.44E-8	36	87	No hit	No description
Gene3D	G3DSA:4.10.280.10	1.6E-11	37	87	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.8E-8	38	83	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	5.4E-7	38	87	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 87 aa Download sequence Send to blast
MPQTSLEMAR MESLMNIPEG SVPCRVRAKR GCATHPRSIA ERDRRTRISG KLKKLQELVP 60 NIDNQTSYAE MLDLAAEHIK GLQHEVE

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018478575.1	5e-57	PREDICTED: transcription factor bHLH129-like isoform X1
Refseq	XP_018478576.1	5e-57	PREDICTED: transcription factor bHLH129-like isoform X1
Swissprot	Q9ZW81	2e-49	BH129_ARATH; Transcription factor bHLH129
TrEMBL	A0A078JUQ8	3e-56	A0A078JUQ8_BRANA; BnaCnng67160D protein
TrEMBL	M4F9G9	1e-55	M4F9G9_BRARP; Uncharacterized protein
STRING	Bra037732.1-P	2e-56	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM10329	18	33

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43140.1	8e-52	bHLH family protein