PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RrC1952_p1

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

Protein Properties

Length: 206aa MW: 23459.5 Da PI: 6.523

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC1952_p1	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	52	1.3e-16	30	120	1	98
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 ffkv +ps + ++ +l++p +f++ g + + s +tle++ g + ++kl ++ +++++l GW+eF++a+ + eg f+ F ++g+s+f v++f+ RrC1952_p1 30 FFKVVLPSTMKRN-MLMIPPRFVKLQG-S-TLSEVVTLETPAGFRRSIKL--KRIGEEIWLHVGWSEFAEAHSISEGHFLFFDYKGNSSF--SVMIFN 120 7888877766665.6******5555.4.4888************..*********************************999..888876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101936	3.14E-22	23	124	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	4.1E-21	25	124	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	1.56E-14	28	120	No hit	No description
PROSITE profile	PS50863	12.576	29	122	IPR003340	B3 DNA binding domain
Pfam	PF02362	2.1E-14	30	120	IPR003340	B3 DNA binding domain
SMART	SM01019	5.6E-17	30	122	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 206 aa Download sequence Send to blast
MVTTRQKKAR VTTSSHRRQL PEPDSSVKKF FKVVLPSTMK RNMLMIPPRF VKLQGSTLSE 60 VVTLETPAGF RRSIKLKRIG EEIWLHVGWS EFAEAHSISE GHFLFFDYKG NSSFSVMIFN 120 VSACEIDYPL DAVHISDSDD DVMDVTDEGF LGTQGARRND QSVDGSGKRP RDDEFEKILN 180 DVDGINSIKP LEEEEGKRVF RGHQFF

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC240102	1e-126	AC240102.1 Sisymbrium irio clone SIR-40E09, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013744123.1	1e-129	B3 domain-containing protein At3g18960
Swissprot	Q84R27	6e-94	Y3896_ARATH; B3 domain-containing protein At3g18960
TrEMBL	A0A3P6F1G9	1e-120	A0A3P6F1G9_BRAOL; Uncharacterized protein
STRING	Bra022374.1-P	1e-112	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1591	25	78

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G18960.1	5e-95	B3 family protein

Publications ? help Back to Top
Mantegazza O, et al. Analysis of the arabidopsis REM gene family predicts functions during flower development. Ann. Bot., 2014. 114(7): p. 1507-15 [PMID:25002525]