PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC1954_p4
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family G2-like
Protein Properties Length: 271aa    MW: 31497.5 Da    PI: 6.8825
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC1954_p4genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like95.34.8e-301367155
     G2-like  1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                kprlrW+ eLH+rF++av+qLGG++kAtPk ++++++++ Ltl+h+kSHLQkYRl
  RrC1954_p4 13 KPRLRWSYELHHRFIDAVNQLGGPNKATPKGLMRILEIPELTLYHLKSHLQKYRL 67
                79****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.1E-271170IPR009057Homeodomain-like
SuperFamilySSF466891.31E-141270IPR009057Homeodomain-like
TIGRFAMsTIGR015571.1E-201367IPR006447Myb domain, plants
PfamPF143793.2E-15113157IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
MDNDKNHKAE EAKPRLRWSY ELHHRFIDAV NQLGGPNKAT PKGLMRILEI PELTLYHLKS  60
HLQKYRLEIR ERFIVSSAAK SQERQNQKYF GDQPDVIVTE EKDDEPNKSR NLQIKEAIEI  120
QLGVQKKLHE QIERKLQDRI EAQGKYLESV LMKAQETLSA SGYRSSNLYG AAWTASRSCL  180
SSEDDEAEEE YDFLGLKKAE NKGIEPTRSL VDCSLASSEC SEAEQDIHSL TIMRRSNKLQ  240
FTEKPEEVMD RKKRRWDDVV CVEQSIRKRA F
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A9e-171266155Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B9e-171266155Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A1e-161366154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B1e-161366154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C1e-161366154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D1e-161366154Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A9e-171266155Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C9e-171266155Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D9e-171266155Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F9e-171266155Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H9e-171266155Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J9e-171266155Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1893852e-65AC189385.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB052E19, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018447997.10.0PREDICTED: myb family transcription factor PHL8-like
SwissprotF4I2741e-69PHL8_ARATH; Myb family transcription factor PHL8
TrEMBLA0A3P6BKV61e-130A0A3P6BKV6_BRACM; Uncharacterized protein
TrEMBLM4DIG21e-130M4DIG2_BRARP; Uncharacterized protein
STRINGBra016289.1-P1e-131(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM38782759
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69580.22e-73G2-like family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]