PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RrC19566_p1

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

G2-like

Protein Properties

Length: 296aa MW: 32697.3 Da PI: 5.3006

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC19566_p1	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	99.6	2.1e-31	213	267	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k r+rWtpeLHe+Fveav+ LGG e+A Pk++l++mkv+gLt++hvkSHLQkYR+ RrC19566_p1 213 KGRVRWTPELHEAFVEAVNLLGGMENAKPKAVLKHMKVEGLTIYHVKSHLQKYRT 267 569***************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	13.258	210	270	IPR017930	Myb domain
SuperFamily	SSF46689	2.51E-17	212	267	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	3.0E-29	212	268	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.2E-22	213	267	IPR006447	Myb domain, plants
Pfam	PF00249	1.9E-10	215	266	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 296 aa Download sequence Send to blast
METHPFRSIP RELSNLAHTS SVPSPSVEAV DISFSSEHNQ FMERPYHVLS DDGGAAVGHN 60 NIYSNDHHNH PSMVSHIGSS SDIPFISEIL DWEPASIPDD IFGFPLDIPI QMEEEEDGGI 120 LTSDDDIIHR QSDLAELITD GENPLMSTLW NDLFLDTSST SAASKVREPT LQSQIQQPRF 180 VLHQTSPIAR TVSSNSNNNS SFTSNNAAAA AAKGRVRWTP ELHEAFVEAV NLLGGMENAK 240 PKAVLKHMKV EGLTIYHVKS HLQKYRTARH IPEPPQGSLE TKLTPCEHAT SLDTKR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	8e-28	212	270	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	8e-28	212	270	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	8e-28	212	270	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	8e-28	212	270	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	8e-28	212	270	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	8e-28	212	270	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	8e-28	212	270	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	8e-28	212	270	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in male gametophyte development. {ECO:0000269\|PubMed:22101548}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018438440.1	0.0	PREDICTED: myb family transcription factor PHL4
Swissprot	Q8GXC2	8e-73	PHL4_ARATH; Myb family transcription factor PHL4
TrEMBL	M4F5W3	1e-139	M4F5W3_BRARP; Uncharacterized protein
STRING	Bra036469.1-P	1e-139	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM856	27	117

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G20400.1	2e-73	G2-like family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Nguyen HT, et al. A Transcription Factor γMYB1 Binds to the P1BS cis-Element and Activates PLA2-γ Expression with its Co-Activator γMYB2. Plant Cell Physiol., 2016. 57(4): p. 784-97 [PMID:26872838]