PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC1961_p4
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family GATA
Protein Properties Length: 320aa    MW: 35565.4 Da    PI: 4.5996
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC1961_p4genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA55.38.7e-18208242135
        GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                 C +C t kTp+WR gp g+ktLCnaCG++y++ +l
  RrC1961_p4 208 CLHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRL 242
                 99*****************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169921.3E-991298IPR016679Transcription factor, GATA, plant
SMARTSM004012.1E-17202252IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.438202238IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.0E-15205266No hitNo description
Gene3DG3DSA:3.30.50.102.4E-14206240IPR013088Zinc finger, NHR/GATA-type
CDDcd002024.07E-15207254No hitNo description
PROSITE patternPS003440208233IPR000679Zinc finger, GATA-type
PfamPF003201.1E-15208242IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0009416Biological Processresponse to light stimulus
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MEQQKLTPEL FLVAGNSDSF VVDDLLDFSN DNGQPDDELE TFPDSSTVSP GNLADISNSS  60
SSLYTDGSVF SDDLCVPSED LAELEWLSNF VEESFSKEDQ DKLQLLSGLQ KPQTTRLTLT  120
KPEPEPEPEL DQIFIPTDTD DSNVSAVPAK ARSKRPRSAA STWASRLLAI AGSSDESYPK  180
KKQLRAKEHE TAGELEGEAG ETGGERRCLH CATDKTPQWR TGPMGPKTLC NACGVRYKSG  240
RLVPEYRPAS SPTFVTARHS NSHRKVMELR RQKEMRDEGL MSQLRCESLV MDIRSNGDDF  300
LIRDNNNSIN HVAPDFRHLI
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00048PBMTransfer from AT4G32890Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018467976.10.0PREDICTED: GATA transcription factor 9
SwissprotO826321e-164GATA9_ARATH; GATA transcription factor 9
TrEMBLA0A398ALJ80.0A0A398ALJ8_BRACM; GATA transcription factor
TrEMBLM4D4I90.0M4D4I9_BRARP; GATA transcription factor
STRINGBra011393.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56822749
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32890.11e-143GATA transcription factor 9
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]