PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RrC19725_p1

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

C2H2

Protein Properties

Length: 140aa MW: 15142.5 Da PI: 10.4773

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC19725_p1	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.3	0.0011	25	47	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C+ C+k F++ L H +H RrC19725_p1 25 FACKTCNKEFPSFQALGGHRASH 47 78**********99999998887 PP
2	zf-C2H2	10.7	0.0017	69	91	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++Cp+Cg F L H+r+H RrC19725_p1 69 HECPICGAEFAIGQALGGHMRKH 91 79*******************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	2.9E-5	21	50	No hit	No description
Pfam	PF13912	5.8E-13	24	49	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	9.369	25	52	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.23	25	47	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	27	47	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	2.1E-5	68	93	No hit	No description
Pfam	PF13912	3.1E-10	69	93	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.13	69	91	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	9.598	69	93	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	71	91	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 140 aa Download sequence Send to blast
MINKMASCLV YLSKYHHHDT KSRVFACKTC NKEFPSFQAL GGHRASHRRS AALEGHAPPS 60 PKRVKPVKHE CPICGAEFAI GQALGGHMRK HRGGGGSRSL APTPVTMKKS GGGNGKRVLC 120 LDLNLTPGEN DYLTLELGRL

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional repressor involved in light acclimation, cold and oxidative stress responses. May regulate a collection of transcripts involved in response to high-light, cold and oxidative stress. {ECO:0000269\|PubMed:11069694, ECO:0000269\|PubMed:14722088, ECO:0000269\|PubMed:15634197, ECO:0000269\|PubMed:16183833}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By H(2)O(2), cold, drought, cold or heat stresses, wounding, cucumber mosaic virus (CMV), exposure to high-intensity light and low-oxygen conditions in roots. {ECO:0000269\|PubMed:12368499, ECO:0000269\|PubMed:14722088, ECO:0000269\|PubMed:15634197, ECO:0000269\|PubMed:16183833, ECO:0000269\|PubMed:18201973, ECO:0000269\|PubMed:18922600}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC007184	1e-89	AC007184.4 Arabidopsis thaliana chromosome 2 clone T11P11 map mi54, complete sequence.
GenBank	BT029330	1e-89	BT029330.1 Arabidopsis thaliana At2g28710 mRNA, complete cds.
GenBank	CP002685	1e-89	CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018481891.1	1e-100	PREDICTED: zinc finger protein ZAT12-like
Swissprot	Q42410	2e-35	ZAT12_ARATH; Zinc finger protein ZAT12
TrEMBL	A0A0D3C2P0	3e-92	A0A0D3C2P0_BRAOL; Uncharacterized protein
STRING	Bo4g166690.1	5e-93	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM531	28	150

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28710.1	2e-74	C2H2 family protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Shi H,Chan Z The cysteine2/histidine2-type transcription factor ZINC FINGER OF ARABIDOPSIS THALIANA 6-activated C-REPEAT-BINDING FACTOR pathway is essential for melatonin-mediated freezing stress resistance in Arabidopsis. J. Pineal Res., 2014. 57(2): p. 185-91 [PMID:24962049] Munekage YN,Inoue S,Yoneda Y,Yokota A Distinct palisade tissue development processes promoted by leaf autonomous signalling and long-distance signalling in Arabidopsis thaliana. Plant Cell Environ., 2015. 38(6): p. 1116-26 [PMID:25293694] Le CT, et al. ZINC FINGER OF ARABIDOPSIS THALIANA12 (ZAT12) Interacts with FER-LIKE IRON DEFICIENCY-INDUCED TRANSCRIPTION FACTOR (FIT) Linking Iron Deficiency and Oxidative Stress Responses. Plant Physiol., 2016. 170(1): p. 540-57 [PMID:26556796] Ben Daniel BH, et al. Identification of novel transcriptional regulators of Zat12 using comprehensive yeast one-hybrid screens. Physiol Plant, 2016. 157(4): p. 422-41 [PMID:26923089] Tang Y, et al. Oxidative stress-induced toxicity of CuO nanoparticles and related toxicogenomic responses in Arabidopsis thaliana. Environ. Pollut., 2016. 212: p. 605-614 [PMID:27016889] Corrales AR, et al. Multifaceted role of cycling DOF factor 3 (CDF3) in the regulation of flowering time and abiotic stress responses in Arabidopsis. Plant Cell Environ., 2017. 40(5): p. 748-764 [PMID:28044345] Xu J,Tran T,Padilla Marcia CS,Braun DM,Goggin FL Superoxide-responsive gene expression in Arabidopsis thaliana and Zea mays. Plant Physiol. Biochem., 2017. 117: p. 51-60 [PMID:28587993] Nguyen HM, et al. Ethanol Enhances High-Salinity Stress Tolerance by Detoxifying Reactive Oxygen Species in Arabidopsis thaliana and Rice. Front Plant Sci, 2017. 8: p. 1001 [PMID:28717360]