PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC1974_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family MYB_related
Protein Properties Length: 128aa    MW: 15014.5 Da    PI: 11.1124
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC1974_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.72.4e-173377147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     rg+++ eE+e +++++  +G++ W++Ia++++ gRt++++k++w+++
       RrC1974_p1 33 RGKFSFEEEETIIQLHSIMGNK-WSAIAARLP-GRTDNEIKNYWNTH 77
                     89********************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.3E-111440IPR009057Homeodomain-like
SuperFamilySSF466897.7E-231486IPR009057Homeodomain-like
PROSITE profilePS500904.171427IPR017877Myb-like domain
PROSITE profilePS5129425.2662882IPR017930Myb domain
SMARTSM007171.4E-163280IPR001005SANT/Myb domain
PfamPF002493.2E-163377IPR001005SANT/Myb domain
CDDcd001674.84E-123578No hitNo description
Gene3DG3DSA:1.10.10.603.4E-234179IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 128 aa     Download sequence    Send to blast
MVTETGELFP RMLRCGKSCR LRWTNYLRPD IKRGKFSFEE EETIIQLHSI MGNKWSAIAA  60
RLPGRTDNEI KNYWNTHIRK RLLKLGIDPL TPRYSNSQRL CFQILNIATK TRTTPPHTTS  120
LTRLTKPK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A7e-21148240108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may function in salt stress response. {ECO:0000305|PubMed:26139822}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt stress. {ECO:0000269|PubMed:26139822}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF3869322e-85AF386932.1 Arabidopsis thaliana Unknown protein mRNA, complete cds.
GenBankBT0011822e-85BT001182.1 Arabidopsis thaliana Unknown protein (At4g05100) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006288136.17e-50transcription factor MYB74
SwissprotQ9M0Y51e-50MYB74_ARATH; Transcription factor MYB74
TrEMBLA0A1J3CVE12e-49A0A1J3CVE1_NOCCA; Transcription factor MYB39 (Fragment)
TrEMBLA0A287HT223e-49A0A287HT22_HORVV; Uncharacterized protein
STRINGCagra.1981s0006.1.p2e-49(Capsella grandiflora)
STRINGXP_006288136.13e-49(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G05100.11e-52myb domain protein 74
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Xu R, et al.
    Salt-induced transcription factor MYB74 is regulated by the RNA-directed DNA methylation pathway in Arabidopsis.
    J. Exp. Bot., 2015. 66(19): p. 5997-6008
    [PMID:26139822]
  4. Huang KC,Lin WC,Cheng WH
    Salt hypersensitive mutant 9, a nucleolar APUM23 protein, is essential for salt sensitivity in association with the ABA signaling pathway in Arabidopsis.
    BMC Plant Biol., 2018. 18(1): p. 40
    [PMID:29490615]