PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC19803_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family C2H2
Protein Properties Length: 180aa    MW: 20220.3 Da    PI: 10.0193
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC19803_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.10.000294870123
                 EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                 ++C+ C+k+Fs+   L  H  +H
  RrC19803_p1 48 FECKTCNKRFSSFQALGGHRASH 70
                 89**********99999998887 PP
2zf-C2H216.52.4e-0595117123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  ++C++Cg+sF +   L  H+r+H
  RrC19803_p1  95 HECSICGQSFGTGQALGGHMRRH 117
                  78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.95E-847117No hitNo description
PfamPF139121.5E-124772IPR007087Zinc finger, C2H2
SMARTSM003550.0934870IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.5334875IPR007087Zinc finger, C2H2
PROSITE patternPS0002805070IPR007087Zinc finger, C2H2
PfamPF139123.6E-1294119IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.53395122IPR007087Zinc finger, C2H2
SMARTSM003550.009795117IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028097117IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0071289Biological Processcellular response to nickel ion
GO:2000280Biological Processregulation of root development
GO:0005634Cellular Componentnucleus
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 180 aa     Download sequence    Send to blast
MKRERSEFEE SIKNLDIAKC LMILSQTSSM VKQLGVNQYT ESSLSNRFEC KTCNKRFSSF  60
QALGGHRASH KKPKLAVDQK EVKHLTNSYK GTHAHECSIC GQSFGTGQAL GGHMRRHRSS  120
MTVEPSQLIS PVISNVPVLK RCSSSKRVLS LDLNLTPLEN DLEILFGKTF FPNIDMKFVV
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in stress responses. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018465120.11e-131PREDICTED: zinc finger protein ZAT11-like
SwissprotQ9SLD41e-107ZAT11_ARATH; Zinc finger protein ZAT11
TrEMBLA0A078FZH21e-115A0A078FZH2_BRANA; BnaA04g21410D protein
TrEMBLA0A397ZNQ81e-115A0A397ZNQ8_BRACM; Uncharacterized protein
TrEMBLM4DL071e-115M4DL07_BRARP; Uncharacterized protein
STRINGBra017188.1-P1e-115(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM53128150
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37430.11e-109C2H2 family protein