PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC1981_p5
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family GeBP
Protein Properties Length: 419aa    MW: 45141.2 Da    PI: 4.4854
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC1981_p5genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF573111.94.3e-35123222298
      DUF573   2 lfqrlwseeDeivlLqGlidf.kaktgk.spsd.didafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWg 97 
                 lfqrlw++eDei lL+G++d+ + ++g   ++  d+  fye++k++++++++k+qlveK+rrLKkK+++ ++k +sgke++f+++hdq +f++s+kiW+
  RrC1981_p5 123 LFQRLWTDEDEIELLRGFLDYiACHRGGgGSHPpDTAPFYEQIKSRLQLEFNKNQLVEKLRRLKKKYRNVMSKFSSGKEVVFKSPHDQTTFDISRKIWN 221
                 79*******************6556666655556****************************************************************8 PP

      DUF573  98 s 98 
                 +
  RrC1981_p5 222 Q 222
                 5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045043.3E-32124221IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 419 aa     Download sequence    Send to blast
MPSDERDTVF SLESPELEED GSAGGGGGGG GGGGGGETDS DEEAVMPAET NVPDEEDDDH  60
EYEDPNSPLV SATATTVTVA LPAGSAVPVA AIPVDSDPKW HRATEIVNPR PPPPPLIDDS  120
RRLFQRLWTD EDEIELLRGF LDYIACHRGG GGSHPPDTAP FYEQIKSRLQ LEFNKNQLVE  180
KLRRLKKKYR NVMSKFSSGK EVVFKSPHDQ TTFDISRKIW NQTGKIIGFE DNSAMEFEET  240
NNVNGNAASV EIDSENVKVS RKRSRSRIGK IDEDRPVSLS DGPIMPNVNN LNENVSSAFG  300
ELSDGRNLGG LIEETVKSCV SPLIKEMMNG TTGMMMAAVG GYPGGGGGGG HAMGVLSPML  360
MPSVNPLGFG GGNGGGGVGD ERWRRQQILE LEVYSRRLEL VQEQIRATVN ELKTMPSGG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1261266KRSRSR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0076271e-42AC007627.3 Genomic Sequence For Arabidopsis thaliana Clone F15F15, Chromosome V, complete sequence.
GenBankAK1179981e-42AK117998.1 Arabidopsis thaliana At5g28040 mRNA for unknown protein, complete cds, clone: RAFL19-20-B12.
GenBankBT0053561e-42BT005356.1 Arabidopsis thaliana At5g28040 mRNA, complete cds.
GenBankCP0026881e-42CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018463759.10.0PREDICTED: LOW QUALITY PROTEIN: probable transcription factor At5g28040
SwissprotF4K5T40.0STKLU_ARATH; Probable transcription factor At5g28040
TrEMBLA0A0D3DCD10.0A0A0D3DCD1_BRAOL; Uncharacterized protein
STRINGAT5G28040.10.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30982764
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28040.11e-147DNA-binding storekeeper protein-related transcriptional regulator
Publications ? help Back to Top
  1. García-Cano E,Hak H,Magori S,Lazarowitz SG,Citovsky V
    The Agrobacterium F-Box Protein Effector VirF Destabilizes the Arabidopsis GLABROUS1 Enhancer/Binding Protein-Like Transcription Factor VFP4, a Transcriptional Activator of Defense Response Genes.
    Mol. Plant Microbe Interact., 2018. 31(5): p. 576-586
    [PMID:29264953]