PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC19996_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family NAC
Protein Properties Length: 360aa    MW: 41389.9 Da    PI: 8.0813
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC19996_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM163.11e-50211721129
          NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.......................kvkaeekewyfFskrdkkyatgkrk 74 
                  lppGfrFhPtdee++++yLk+kv ++++ +  ++ e+d++k+ePwdLp k                       ++k +eke yfF++rd+ky+tg r+
  RrC19996_p1  21 LPPGFRFHPTDEEIITFYLKEKVLDSRFMA-VAMGEADLNKCEPWDLPsKysiqenfqlpthkfqfffdhfkkRAKMGEKEFYFFCQRDRKYPTGMRT 117
                  79*************************888.67***************5499**************99998876667999****************** PP

          NAM  75 nratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129
                  nrat+sgyWkatgkdke+++ kg lvg+kktLvfy+grap+gekt+Wvmheyrle
  RrC19996_p1 118 NRATESGYWKATGKDKEIFKGKGCLVGMKKTLVFYRGRAPRGEKTNWVMHEYRLE 172
                  ********************9********************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.23E-5616197IPR003441NAC domain
PROSITE profilePS5100556.00221196IPR003441NAC domain
PfamPF023653.8E-2822171IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    Send to blast
MAVVVEEGVV LNHGGAELVG LPPGFRFHPT DEEIITFYLK EKVLDSRFMA VAMGEADLNK  60
CEPWDLPSKY SIQENFQLPT HKFQFFFDHF KKRAKMGEKE FYFFCQRDRK YPTGMRTNRA  120
TESGYWKATG KDKEIFKGKG CLVGMKKTLV FYRGRAPRGE KTNWVMHEYR LEGKYSYHKL  180
PKSARDEWVV CRVFHKNNPS TTTQQTTRIP IKNLTRMDSL ENIDHLLAFS SLPPLMDPSF  240
TDQHDQHNFK PINPPTYDIS SPIQPHHFNS NYQSIFNHQG YGSASGSGST YNNHKEMIKM  300
EQSLVSVSQE TCLSSDVNAT TTTEVSSGPV MKQEMSMTGM VNCSKSYEDL CDLRGILWDY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A5e-451919813170Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtBinds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00518DAPTransfer from AT5G18270Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP6413570.0KP641357.1 Brassica napus NAC transcription factor 87.1 (NAC87.1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018468696.10.0PREDICTED: NAC domain-containing protein 92-like
SwissprotQ9FK440.0NAC87_ARATH; NAC domain-containing protein 87
TrEMBLA0A1J3DX940.0A0A1J3DX94_NOCCA; Uncharacterized protein
STRINGBra023669.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22692775
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18270.20.0Arabidopsis NAC domain containing protein 87
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]