PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC1999_p3
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family HB-other
Protein Properties Length: 226aa    MW: 25168.1 Da    PI: 5.4705
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC1999_p3genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox46.94.6e-153788257
                T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
    Homeobox  2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57
                +kR+  t+ ql++Le+    + yps+++r+eL+ kl+L++rq ++WF+ rR k+kk
  RrC1999_p3 37 KKRQMKTPFQLQTLEK----ETYPSEATRAELSVKLDLSDRQLQMWFCHRRLKDKK 88
                89************97....5*********************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.6E-141490IPR009057Homeodomain-like
PROSITE profilePS5007113.4592489IPR001356Homeobox domain
SMARTSM003891.5E-113593IPR001356Homeobox domain
SuperFamilySSF466898.13E-143598IPR009057Homeodomain-like
PfamPF000461.3E-123788IPR001356Homeobox domain
CDDcd000863.09E-143788No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
MKEVEIESLV MGSDEEDQIK NGNENKKKKI DTSNNNKKRQ MKTPFQLQTL EKETYPSEAT  60
RAELSVKLDL SDRQLQMWFC HRRLKDKKDG QAKKPAAPAP AAALSSLNEL PAADVDRSGS  120
GSGSGCSPYS ESRRNFAGGS SSSRDEVDEY EQPRLSVMVR RAVACIEGQL GEPLREDGPV  180
LGMEFDPLPP GAFGTPIGME EHQGHPYESK MYEPHDVRPR RVSFLD
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18188RRLKDKKD
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator required for the maintenance of the plant vegetative phase. In association with CHR11 or CHR17 may prevent the early activation of the vegetative-to-reproductive transition by regulating key genes that contribute to flower timing, such as FT, SEP1, SEP3, AGL8/FUL, SOC1 and FLC. {ECO:0000269|PubMed:22694359}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0101552e-31AC010155.3 Genomic sequence for Arabidopsis thaliana BAC F3M18 from chromosome I, complete sequence.
GenBankCP0026842e-31CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018450870.11e-110PREDICTED: homeobox-DDT domain protein RLT1-like
SwissprotF4HY567e-86RLT1_ARATH; Homeobox-DDT domain protein RLT1
TrEMBLA0A078HG021e-101A0A078HG02_BRANA; BnaC03g58690D protein
STRINGBra010869.1-P1e-100(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2568133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28420.18e-70homeobox-1